Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005807.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq9745 412 6e-112 >seq9745 Length=7305 Score = 412 bits (456), Expect = 6e-112 Identities = 690/986 (70%), Gaps = 29/986 (3%) Strand=Plus/Minus Query 1630 CGAAGGCTGCATTTTTAATTGCCCAGGCTTTTAGGGCAGCATTCTTGTCCTCGTCTAAAT 1689 ||||| |||||||| | | ||||||| || | || || ||||| || ||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1690 ACTCGGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCT 1748 |||| | || ||| |||||| ||||||||||| ||||||||||| || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1749 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1808 |||| || || || || ||||| | | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1809 AACTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCC 1868 || || ||||| || |||| ||| | ||||| |||| ||||||||||||||||||||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1869 TCGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAGTTATGACGTGGA 1928 || ||| |||| || ||||||| ||| ||| ||||| | ||| || || ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG---TGGG 6561 Query 1929 CTCAAAGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCTTCTATCACAATGCTA 1988 | || || || ||||| || || ||||| || || || ||||||| || || || Sbjct 6560 CCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTC 6501 Query 1989 ATGGGCCTCCATGGCCGCGCAGCGGAATCCCTGACGTTCTCGGCAGCCCATCCCTCAAGT 2048 || || | |||| | ||| || | | ||||| || || |||| | | ||| Sbjct 6500 ATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA 6441 Query 2049 TGCTCTGGAACTTGATCAAATGAAGAAGATAAAAAAGGAGAAACAAATTCCTCCAACGGA 2108 ||| || || | | ||||| | |||| ||||||||||||| || | || || Sbjct 6440 ATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT-TGCA--GGT 6384 Query 2109 GGAGCA---AAAATCCTATCTAAATTGCTATTTAAATTATGAAATTGTAAAACAAAATCT 2165 ||||| || ||| |||| ||||| |||||| ||||||| ||||| | ||||| Sbjct 6383 GGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCT 6324 Query 2166 TTGGGAGCTTTCTCCCTTAATATACAGAGTGCCGATGACTTAGATCCTGAGTTGATTGCC 2225 || || ||| ||||| | ||| | || | || ||||| || || || | || Sbjct 6323 TTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2226 TCGGCATACGCGTCGGTGGCAGACTGGCAACCTCCTCTAG------CTGATCTTCCATCG 2279 || || || | || | || || || ||| ||||| | | ||||||||||| Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2280 ACCTGGAACACTCCAAAATCAACGATGTCTCCGTCTTTCTCCATATAGGTCTTGACATCT 2339 | |||||| |||| |||||| | ||||||| ||||| ||||| | ||| || | Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT-- 6146 Query 2340 GACGAGCT---TTTAGCCGCCTGAATGTTGGGATGGAAATGTGCTGACCTGCTTGGGGAT 2396 | ||||| |||| | |||| ||||| ||||||||||||| ||||||| |||| || Sbjct 6145 -AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2397 ACTAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATTTCCCCTCGAACTGGATGAGGACG 2456 || || |||||||||| | ||| ||||| |||| ||||| ||||| ||||| || ||| Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2457 TGGAGATGAGGGCTCCCATTTTGATGTAGC-TCTCTGCAGATCCTTATGAATTTAATGTT 2515 |||||| |||| || |||| ||| ||| |||||||| ||| | ||| |||| |||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTT 5968 Query 2516 AGTTGGTGTGTTTAATTTTTG--TAATTGGGTTAGGGCTTCTTCTTTGTCGATGGAGCAT 2573 ||| || |||| ||||| |||||| | || ||||| ||||| | ||||| Sbjct 5967 TACTGGGGTATTTAGGTTTTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAG 5910 Query 2574 TGTGGGTATGTGAGGAAATAATTTTT 2599 || || ||||| || ||| |||||| Sbjct 5909 TGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718083715000