Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005812.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 459 5e-126 >seq9745 Length=7305 Score = 459 bits (508), Expect = 5e-126 Identities = 666/930 (72%), Gaps = 19/930 (2%) Strand=Plus/Minus Query 1650 TTCGTCCAAAAACTCCTTAAAAGAGGAAGATGGACCAGGATTGCAGAGGAAGATAGTGGG 1709 |||||| | |||||| ||| || || || || |||||||| |||||||| ||||| Sbjct 6807 TTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGG 6748 Query 1710 AATTCCACCTTTAATTTGAATTGGTTTACCGTACTTTGTATTGCTTTGCCAGTCCCTCTG 1769 || || ||||||| || || || || ||||| || |||| ||||| || || | Sbjct 6747 CATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTT 6688 Query 1770 GGCCCCCATGAATTCTTTTAAGTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTT 1829 ||||||||||||||| || || || |||| |||| ||||||| |||| |||||||||||| Sbjct 6687 GGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTT 6628 Query 1830 ATACCAAGCATCATTGCTGTACACTTTTGGGCTAAGGTCTAGATGTCCACACAAATAATT 1889 ||||| ||||||||| ||||| ||||||||| | || ||| || || || ||||| Sbjct 6627 GTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATT 6568 Query 1890 ATGAGGGCCCAATGATCTGGCCCACATTGTTTTGCCGGTTCTAGATTCACCTTCAATCAC 1949 || ||||| |||||||| ||||| |||||||| || ||||||| |||||||| | || Sbjct 6567 GTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAAC 6508 Query 1950 CATTCCTATGGGTCTCCACGGCCGCGCAGCGGCA-TCACATACATTTTTCTCAGCCCAGG 2008 || | || |||| |||| | ||| |||| ||||| || |||| ||| ||||| Sbjct 6507 TATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTCAACCCAGT 6449 Query 2009 AGGCAAGTTCTTTTGGAACTTGATTGAAAGACGACAATTCGTAAGGATTAACAAATAATT 2068 ||| | || || | || || | || | ||||| |||| ||| | Sbjct 6448 CTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTG 6389 Query 2069 CT--TGGATTGGGGCAAATATCCGGTCCAAATTAGCATTTAGGTTGTGGTACTGCAGTAC 2126 | |||| || |||||| |||||||||||||||| | || | | | Sbjct 6388 CAGGTGGAGCCTGG--AATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA 6331 Query 2127 ATAGTCCTTTGGAGCTAATTCCTTAAGGA-CTGCAAGAGCCTCCGACTTACTTCCGCAGT 2185 ||| || ||||| | |||| ||| | || ||| || | | ||| || | | Sbjct 6330 ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAAT 6272 Query 2186 TAATTGCCTTTGCGTATGCGTCATTGGCGGATTGTTGTCCGCCTCTAG------CAGATC 2239 | | || | |||||| | ||||| || |||||||| || ||||| | |||||| Sbjct 6271 TTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATC 6212 Query 2240 TTCCATCAACCTGGAATTCTCCCCATTCAATTGTATCTCCGTCCTTCTCCAAATAGGACT 2299 ||||||| | ||||||||||||||| |||||||||||||||| |||||| | ||| |||| Sbjct 6211 TTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACT 6152 Query 2300 TGACGTCGGAGCTTGATTTAGCTCCCTGAACATTTGGATGGAAATGTGCTGATCTGGTTG 2359 | |||| |||||| |||||| ||||||| | |||||||||||||||| ||| ||||||| Sbjct 6151 TCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2360 GGGAAACCAGGTCGAAGAATCTGTTATTTTTGCACTGGAATTTCCCTTCGAATTGAATGA 2419 | || || || ||||||||||||||||| |||| | | |||||||||||||| || | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2420 GCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCCCTGCAGATTTTGATATAttttt 2479 |||| |||||| |||| || | ||| || || ||||| || ||||| ||||| | Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2480 ttGAGGTTGGGGTTTGTAG--TTCCTTCAATTGAGAGAGGGTTTCTTCCTTGCTCAGAGA 2537 | |||||| | ||| || |||||||||| | ||| || || | ||||| Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGA--GCTTCCTCTTTTGTAAGAGA 5914 Query 2538 GCACTGAGGATATGTGAG-AAAATAGTTTT 2566 ||| || |||||||| || |||||| |||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680