Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005842.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq9745 468 9e-129 >seq9745 Length=7305 Score = 468 bits (518), Expect = 9e-129 Identities = 701/982 (71%), Gaps = 24/982 (2%) Strand=Plus/Minus Query 1614 CGAAGATCGCATTCTTCAAAGCCCAGTTTTTAAGTGCAAAATTCTTGTCTTCATCCAAGA 1673 |||||| ||||| | | ||||||| |||| || ||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1674 ACTCTTTATAACTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1733 ||||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1734 TAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCATTCTCTTTGGGCCCCCATGA 1793 ||| || || ||||| ||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1794 ATTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGATGTTGTACCAGGCAT 1853 |||||||||| || |||| ||| | ||||| |||| |||||||| |||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1854 CATTACTGTAGATTTTTGGGCTAAGGTCTAGATGACCACATAGATAATTATGTGGACCCA 1913 |||| |||| |||||||||| | || |||||| |||| ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1914 ACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACTCTCAATAACAATACTTATGG 1973 | || |||||||| |||||||| ||||| | | |||| || | ||| ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1974 GCCTAATGGGCCGCGCAGTGGTATCGGCAATATTTTCGCAAGCCCACTCTTCAAG-TTCT 2032 | | |||| | ||| || | ||| ||||| | |||| |||| ||| ||| Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2033 ACTGGAACTTGATCGAATGAAGAGGAAGAAAAAGGTGAAACATAAGGAGCTGGTGGCTCC 2092 | || || | | |||| | ||| |||||| |||||||| || ||||| || Sbjct 6436 -CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2093 TGAAAATATC-TATCTAAATTTGAATTTAAATTATGAAATTG-AAGTAGAAAGTCTCTAG 2150 || |||||| |||| ||||| | |||||| ||||||| | || || | | ||| | | Sbjct 6377 TG-GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA-ATAATCTTTTG 6320 Query 2151 GAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGG 2210 | ||| ||| | | ||| | | ||| | ||| ||||| ||||| | || || | Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2211 CATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCGTCCATCGACTT 2264 | || | || || || ||||| ||| |||| | || |||| |||||| | | Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2265 GGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATATAGGATTTGACAT---CGC 2321 |||| |||| |||||| ||||||| || || ||||| || || || | || Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2322 TTGAACTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGA 2381 | || ||| ||||||| ||||| ||||||||||||| |||||||||||| || | Sbjct 6139 TGGA---TTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAA 6083 Query 2382 GGTCGAAGAATCTGTTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCA 2441 | |||||||||||||| || |||| | |||| |||||||| ||||| ||||| || | Sbjct 6082 GATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGA 6023 Query 2442 AGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAAATTCTAATAAATTTTTTG-GAAGTG 2500 |||| || | ||||||| ||||||||||| | || |||| ||| | || Sbjct 6022 GACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTG 5963 Query 2501 GGTGTTTGTAGATTT--AATGATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCATTTGG 2558 || || | ||| ||| ||| ||| || || || || ||||| || |||||||| | || Sbjct 5962 GG-GTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGG 5906 Query 2559 GAAAAGTGAGAAAATAATTTTT 2580 || | || |||||| |||||| Sbjct 5905 GATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8651509257540