Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005843.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq9745 419 4e-114 >seq9745 Length=7305 Score = 419 bits (464), Expect = 4e-114 Identities = 675/961 (70%), Gaps = 32/961 (3%) Strand=Plus/Minus Query 1538 TCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTGAACTGGCTTCCCGTA 1597 |||||||||||| || | ||||| || ||||| ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1598 TTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGTTTCATCTT 1657 | | | || ||||||| || ||| |||||| || | || || ||||||| Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------ 6661 Query 1658 TAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCCACATCATTTGAGTAAACCCT 1717 |||||| ||||| |||| |||||||||||||||| ||||||| ||| | Sbjct 6660 TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1718 AGGATTGAAATCCAAGTGTCCACTCAAATAATTATGTGGTCCTAAAGCACGAGCCCACAT 1777 || | | ||| | || || | || ||||| ||||| ||||| | | |||||| || Sbjct 6600 TGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1778 CGTCTTTCCTGTCCTCGAATCACCCTCGATGATTATACTAATAGGTCTCTCCGGCCGCGC 1837 || || || || || | ||||| || | | |||||| ||||||| | |||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1838 AGCGGCACCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCGTCCGGAACGTTCGT 1897 || ||||| | ||| | || ||| |||| ||||| | ||||| ||||| | Sbjct 6480 AGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTT 6424 Query 1898 GAAGGAGGAGAGTGGAAACGGAGGAACCCATGGTTCCGG---AGCCTTAGCGAATATCCT 1954 || | | | ||| |||| ||| || | | || ||||| ||||||| | Sbjct 6423 AAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCAT 6367 Query 1955 GTCTAAGTTACTAGACAGGTTGTGATATTGAAAAAGAAACTCTTTGGGGAGCTTCTCTTT 2014 || || ||| | | | ||| | | ||| | | ||||| ||| | || || | Sbjct 6366 ATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCT 6307 Query 2015 AATAATTCGCATGGCTTCTTCTTTCGAGGACGCATTTAGGGCCTCTGCGGCAGCGTCGTT 2074 ||| || | |||| || ||| || | ||||||||| |||||| | | || || Sbjct 6306 AATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATT 6247 Query 2075 AGCTGTTTGCTGACCTCCTCTAG------CAGATCTTCCGTCGATCTGGAATTCTCCCCA 2128 ||| | ||| ||||| ||||| | |||||||||| || ||||||||||||||||| Sbjct 6246 AGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCA 6187 Query 2129 TTCCAATGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCC 2188 || | ||||||||| | ||| ||||| || ||||| |||| |||||| |||||| |||| Sbjct 6186 ATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCC 6127 Query 2189 CTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAACTGTCTTTG 2248 ||| ||||| ||||||||||||| |||||||||||| || || || ||||| ||| | Sbjct 6126 CTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTT 6067 Query 2249 ATTCGTG-ATTTGGATTTTCCCTTCGAACTGCATAAGCACGTGGAGATGATGTTCCCCAT 2307 ||||||| || || | || ||||||||| || ||||||||||||||| || |||||| | Sbjct 6066 ATTCGTGCATGTGTACTT-CCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGT 6008 Query 2308 TTTCGTGCAGTTCTCTGCAGATCTTGATGTATTTTTTGTTAGAAGGA--AGTT--GTATG 2363 |||| || ||||||||| |||||||||||||| ||||| || | || || | Sbjct 6007 TTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTT 5948 Query 2364 GACAGTAGTTGATCTAGGGCTTCTTCTTTTGTAAGAGGACATTGGGGGTATGTTAGGAAG 2423 || || |||| || ||||| ||||||||||||| || ||||| |||||||| || Sbjct 5947 GAA--TAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2424 ATATTTTTTGCTTGAAGGCGAAAACGTTTAGGTGGTGGCATTTTTGTAA-TTAATAGATG 2482 |||||||| | || ||||||||| | | |||||| ||||||| | ||| |||| Sbjct 5891 ATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATG 5832 Query 2483 T 2483 | Sbjct 5831 T 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8153785932720