Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005844.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 533 3e-148 >seq9745 Length=7305 Score = 533 bits (590), Expect = 3e-148 Identities = 705/974 (72%), Gaps = 20/974 (2%) Strand=Plus/Minus Query 1592 CTGCATTCTTGAGAGTCCAATTCTTTAGTGCAGCATTCTTTTCCTCGTCTATGTACTCTT 1651 ||||||| |||||| ||| ||| | || || ||||| || ||||| | |||||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1652 TATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTT 1711 |||| || |||||||| || |||||||| |||||||| ||||| || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1712 GAACTGGCTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCT 1770 || ||||| ||||| |||| | || ||||| || |||| |||||||||||| || Sbjct 6730 AAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCC 6672 Query 1771 TTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCAATCACGTTGTACCAAGCATCATTA 1830 |||||||| |||| || | || || |||| |||||| ||||||||||| |||||||| Sbjct 6671 TTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1831 CTGTAGACCTTTGGGCTCAGGTCCAGGTGTCCACATAAATAATTGTGTGGGCCTAAAGAC 1890 |||| |||||||| | || || || ||||| ||||||||||||||||| || Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1891 CTGGCCCACATTGTCTTCCCTGTCCTACTCTCGCCCTCTATGACAATACTTTTGGGTCTC 1950 || ||||| ||||| ||||| || ||| ||| || |||| || ||||| | |||| Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 1951 CATGGCCGCGCAGCGGCACTCACAACATTCTCAGCCGCCCACTCTTCAAGTTCTTCTGGA 2010 |||| | ||| |||||||||||| || || | |||| |||| ||| || || Sbjct 6491 TGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGT 6432 Query 2011 AC-TTGATCGAAAGNNNNNNNNNNNNNNNNNNNNNNTAAAACCTCCAAAGGAGGAGCA-- 2067 || ||| | ||| | | | || || ||||| Sbjct 6431 ACGTTGTT--AAATGTACTGGATACAAAAGGAGAAACATATATTGCA--GGTGGAGCCTG 6376 Query 2068 -AATATCCTATCTAAATTAGCATTTAGATTATGAAATTGTAGTACATAATCTTTAGGTGC 2126 |||||| |||| ||||||||||||| ||||||| ||| ||||||||| || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2127 TAACTCCTTAATCA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGCGT 2185 | ||| |||| | ||||||| || ||| ||| || | || || ||| | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2186 AAGCATCATTGGCTGTCTGTTGACCCCCTCTTG------CAGATCTTCCATCGATCTGAA 2239 || ||||||| || | |||||||||||||||| ||||||||||||| ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2240 ACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCCGAGCTTG 2299 | |||||||| || | || ||||||| |||||| | ||| ||||| |||| ||||| | Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2300 ATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACCAAATCGA 2359 ||||| ||||||| ||||| ||||||||||||| |||||| ||||| || || | ||||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2360 AGAATCGTTGATTCGTGCATCTGAATTTCCCCTCGAATTGGATAAGCACATGGAGATGAG 2419 |||||| | |||||||||| || | ||||| ||||||||||||||||| |||||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2420 GGCTCCCATCTTCGTGTAGTTCTCTACAGACCTTGATGAACTTCTTGTTAGTTGCGGTGT 2479 | || | ||| || |||||| || | ||||||| | |||||||| || ||| | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2480 CTAGGGCTTTTATTTGGTCA-AGGGTTTCCTCTTTTGTAAGCGAACAGTGTGGATAAGTT 2538 || || ||| | | | | || | ||||||||||||||| || ||||| ||||| ||| Sbjct 5956 TTA-GGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2539 AGGAAATAATTTTT 2552 || ||| |||||| Sbjct 5897 AGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080