Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 508 1e-140 >seq9745 Length=7305 Score = 508 bits (562), Expect = 1e-140 Identities = 712/983 (72%), Gaps = 37/983 (4%) Strand=Plus/Minus Query 1592 AAGATTGCATTCTTTAATGCCCACTGCTTAAGTGCTGCATTCTTATCTTCATCGAGATAC 1651 |||| |||||| | | ||||| ||||| ||||| ||||||||||| || ||| || Sbjct 6854 AAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAAC 6795 Query 1652 TCTTTATAACTGCTGTTTGGTCCCGGATTGCAGAGGAAGATGGTGGGAATTCCACCTTTA 1711 ||||||||||| ||| ||||| |||||||| |||||||| ||||| || || |||||| Sbjct 6794 TCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTA 6735 Query 1712 ATCATGACTGGCTTTCCGTA-CTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAA 1770 | | ||||||||||| |||| | || ||||| || || | |||||||||||| Sbjct 6734 ACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1771 TTCTTTAAAATGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCAAGCATC 1830 ||| |||||||| |||| ||| | || || |||| |||||||||||||||||| ||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1831 ATTACTGTACACCTTTGGACTTAAGTCA-AGTGGCCGCACAAGTAATTGTGTC--CCCAA 1887 ||| ||||| ||||| |||| ||| | || ||||| |||||||||||| || || Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1888 AGAACGCGCCCACGCAGTTTTGCCCGTTCTACTATCACCCTCTAAAACTATTCCTATGGG 1947 || | ||||| ||||| || |||||| ||||| |||| |||||| | || || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1948 TCTAATCGGCCGCGCAGA---ACACACCACGTTACCTGAAACCCAATC--GACGAGTTCT 2002 || |||| | |||| || ||| ||||| || |||||| || || || | Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC-- 6438 Query 2003 TGCGGAACTTTGTCGAAGGATGAAATAGA---AAAAGGAGAAACATACACCTCTACAGGA 2059 | ||| || |||| || || | | || ||||||||||||||| | | |||| Sbjct 6437 TCCGGTACGTTGTTAAA---TGTACTGGATACAAAAGGAGAAACATATAT---TGCAGGT 6384 Query 2060 GGTGCA---AAAATCCTATCTAAATTATT-TTTAATATTATGGTATTGAAAAATAAAATC 2115 || || || ||| |||| |||||| |||||| | ||| | | ||| | |||| Sbjct 6383 GGAGCCTGGAATATCATATCCAAATTAGCATTTAATCT-ATGAAAACGTAAATAATAATC 6325 Query 2116 TTTTGGTAGTTCTTCCCTAATTATTGCTAAAGCTGCTTCGGCTGAACCTGAATTTAATGC 2175 |||||| ||| |||||||||||| |||| |||||| || || ||||||| || Sbjct 6324 TTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGC 6265 Query 2176 CTTTGCGGCAGTGTCGTTAGCAGACTGCTGACCGCCTCTAGCGCTT------CTGCCGTC 2229 | |||| | || ||||| || || ||||| ||||| | || || || || Sbjct 6264 TTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATC 6205 Query 2230 GACCTGGAATTTTCCCCATTCCAGTGTGTCCCCATCTTTGTCGATATAGGACTTGACGTC 2289 | |||||||| |||||| || | ||| || || | || |||||||| ||||| |||| Sbjct 6204 CATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTA 6145 Query 2290 GGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGACAC 2349 ||||||||||||| ||||||| ||||| ||||||||||||| ||||| |||| || || Sbjct 6144 GGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGAC 6085 Query 2350 CAAGTCGAAGAATCTGTTATTCGTGCAGACGAACTTCCCTTCGAACTGGATAAGAACGTG 2409 | ||||||||||||||||||||||| | ||||||||||||| |||||||| ||||| Sbjct 6084 AAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTG 6025 Query 2410 GATATGCGGAGACCCATCTTCGTGCAACTCTCTACAAATTTTGATAAATTTCTTTGAAGT 2469 || | | || || | ||| || ||||| ||||| ||||| ||||||| Sbjct 6024 GAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Query 2470 TGGAGTTTCTAGGGTTTG--TAATTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCATTTG 2527 ||| || | |||| |||| |||||| || || | || ||||| ||||||||||| | | Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2528 GGATAAGTGAG-GAAATAGTTTT 2549 ||||| || || ||||| |||| Sbjct 5906 GGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300