Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005850.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq9745 327 2e-86 >seq9745 Length=7305 Score = 327 bits (362), Expect = 2e-86 Identities = 660/963 (69%), Gaps = 46/963 (5%) Strand=Plus/Minus Query 1444 AGATGCATTCTCCTCTTTATCGAGGAAGTTTTTATAGCT--AGTCCCCTCACCTGGATTG 1501 || ||| |||| |||| || || || | |||||| || ||| || |||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTC--CTGGATTG 6765 Query 1502 CACAGCACGATTGACGGGATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTG 1561 || || | ||||| || || || ||||||| || || |||||||||||| | | ||| Sbjct 6764 CAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTA 6705 Query 1562 GTTTGCCAGTCCCTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTTCAAATAATTA 1621 ||||| || |||| |||||| || ||||| || |||| ||||| |||| Sbjct 6704 TACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGC 6651 Query 1622 GGGCTTATGTCATCAGTGACGTTATATTCCACG--TCATTAGAATATACCCTATTAT--T 1677 || | || |||| ||||||| || ||| | ||||| | ||| | || | Sbjct 6650 GGATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGT--TGTACGTTTTTGGGCT 6595 Query 1678 AAAATCAAGATGGCCACTTAGATAGTTATGTTTACCTAATGACCTGGCCCACATTGTCTT 1737 | |||| ||| || | || || || ||| |||||||| || ||||| ||||| || Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1738 TCCGGTTCGACTATCGCCTTCTATGATGATACTGATCGGTCTTTCTGCCCGCGCAGCGGC 1797 || |||| | || ||||||| | ||||| || |||| | | || | ||| ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 1798 ACCCCTTCCAAAATAATCGTCAGCCCATTCCTGCATCTCATCTGGAACGTTTGTGAAGGA 1857 || | ||| | || ||| |||| || || | || || ||||| | || | Sbjct 6474 ACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGT 6418 Query 1858 GGAGAGTTGAAACGGAGGAACCCATGGTTC---TGGAGACTTGTGAA--ATATTCTGGTT 1912 | | ||| |||| ||| || | | ||||| || | | |||| | || Sbjct 6417 ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATT 6358 Query 1913 -GCGTTTGCGACAAGGTTGTGATGTTG-AAGGAAGAAGTGTTGCGGTTGTTCTTCCTTTA 1970 || ||| | | ||| | || || || | || || ||| |||| | | Sbjct 6357 AGCATTT------AATCTATGAAAACGTAAATAATAA-TCTTTTGGGCGTTTTTCCCTAA 6305 Query 1971 TTATTTGCAGTGCTTCCTCAGCGGACGCTGCGTTTAACGCCTTGGCATACGTATCGTTAG 2030 |||| | | ||| | ||| | | |||| || | || || ||| |||| Sbjct 6304 TTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAG 6245 Query 2031 CAGATTGCTGACCTCCTCTAG------CAGATCTTCCGTCGATCTGGAATTGTCCCCGTT 2084 | ||||| ||||| ||||| | |||||||||| || |||||||||| ||||| | Sbjct 6244 CCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAAT 6185 Query 2085 GAATTGTATCTCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCT 2144 |||||||||||||| ||| ||||| || ||||| || | ||||||||||||| |||||| Sbjct 6184 CAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCT 6125 Query 2145 GAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTAT 2204 | ||||| |||||||||||||||||||||||||| || || | |||||||||||||||| Sbjct 6124 GTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTAT 6065 Query 2205 TCGTGCAGTTGTATTTTCCCTCGAATTGGATAAGCACGTGGAGATGAGGTTCCCCATTTT 2264 ||||||| |||| || || |||||||||||||||||||||||| ||||||||| |||| Sbjct 6064 TCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTT 6005 Query 2265 CGTGAAGCTCTCTGCAGATTTTGATGAACTTCTTGTTTACTGGTGTCTGAAGAGCTTTGA 2324 | ||| |||||||| || |||||| | |||||||||||||| || | || | ||||| Sbjct 6004 CATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG-GTTTTGA 5946 Query 2325 TT--TGGCAGAGGGCTTCTTCTTTGGGTAATGAACAATGTGGGTATGTAAG-GAAATAGT 2381 | | | |||| ||||| ||||| | | || || || || ||||| || ||||| | Sbjct 5945 ATAATTG-AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATT 5887 Query 2382 TTT 2384 ||| Sbjct 5886 TTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8007956168760