Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005852.1 Length=2575 Score E Sequences producing significant alignments: (Bits) Value seq9745 396 4e-107 >seq9745 Length=7305 Score = 396 bits (438), Expect = 4e-107 Identities = 633/904 (70%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 1527 CCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTAATTTGAACAGGCTTTCCATAT 1586 |||||||||||||| | ||| | ||| || || ||||||| || || |||||||| ||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1587 TTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAATTCTTTCCAGTGCTTTATTTTT 1646 | | || ||||||| || | | |||||| || ||||| || | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATG------TTTT 6660 Query 1647 AAATATTGTGGGTTGACATCATCAATGACGTTATACTCTACATCGTTTGAGTAAACCCTA 1706 ||||| | || | || | |||||||||||| ||| |||| || ||| | Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1707 GAATTGAAATCCATGTGACCACTTAGGTAATTATGAGAACCTAATGCACGTGCCCACATT 1766 | | | ||| ||||| | || |||||| || | ||||||| | ||||| ||| Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1767 GTTTTCCCTGTTCTAGAATCACCTTCAACGATTAAACTTATAGGTCTTTCTGGCCGCGCA 1826 |||||||| ||||||| |||||||| || | || ||| ||||||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1827 GCGGAATCCCTCCCAAAATAATCATCTGCCCATTCTTGCATATCAACTGGAACATTTATG 1886 | || | ||| ||| | || || |||| ||||| | | | || || || | Sbjct 6479 GAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 1887 AATG-AC--GATAGTCGAAAAGGAGGGACCCATGGTTCAGGAGGTTTACGAAATATTTTG 1943 |||| || |||| |||||||| || || | |||| || | ||||| | Sbjct 6422 AATGTACTGGATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATA 6366 Query 1944 GTTGCATTGGCTAACAAGTTATGATGTTGAAGAAAGAAGTGTTGCGGTTGTTCTTCCTTT 2003 ||| || || ||||| | | | | | | || || ||| |||| | Sbjct 6365 TCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTA 6306 Query 2004 ATAATCTGCAACGCTTCTTCAGATGACCTAGCATTTAATGCCTTTGCGTATGTGTCATTA 2063 || |||| || ||| || |||| || ||||| || | |||||| |||||| Sbjct 6305 ATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTA 6246 Query 2064 GCAGATTGCTGACCTCCTCTAG------CAGATCTTCCGTCGATCTGGAATTCCCCCCAT 2117 || ||||| ||||| ||||| | |||||||||| || ||||||||||| ||||| Sbjct 6245 GCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAA 6186 Query 2118 TGAATTGTGTCTCCGTCCTTATCAATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCC 2177 | |||||| ||||||| ||| || || || ||||| || | ||||||||||||| ||||| Sbjct 6185 TCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCC 6126 Query 2178 TGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGAAACCAGATCGAAGAATCTGTTA 2237 || ||||| |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 6125 TGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTA 6066 Query 2238 TTTTTGCACTGGTACTTGCCTTCGAACTGGATAAGCACATGCAGATGCGGTTCCCCATCT 2297 || |||| |||||| |||||||| ||||||||||| || ||| | ||||||| | | Sbjct 6065 TTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTT 6006 Query 2298 TCATGCAATTCTTTGCACACTTTAATGAATTTCTTGTTTGTCGGAGTGATTAGGTTTTG- 2356 ||||| |||| |||| | || ||| ||||||||||| || || |||||||||| Sbjct 6005 TCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGA 5946 Query 2357 -TAATTGGGAAAGTGCTTCTTCTTTGGATAGAGAGCACTTGGGGTATGTAAGGAAATAAT 2415 ||||| || || ||||| ||||| | |||||||| | ||| ||||| || ||| || Sbjct 5945 ATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATAT 5888 Query 2416 TCTT 2419 | || Sbjct 5887 TTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8055509352660