Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq9745 549 3e-153 >seq9745 Length=7305 Score = 549 bits (608), Expect = 3e-153 Identities = 726/1000 (73%), Gaps = 14/1000 (1%) Strand=Plus/Minus Query 1583 GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGA 1642 ||| | ||||| | |||| ||||| |||||| |||||||||| || | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1643 AATAtttttttCTTCGTCTAGATATTCCTTATATGAGGAGGTAGGTCCTGGATTGCAGAG 1702 || || |||||||| ||| | || ||||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1703 GAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCATACTTTGTGTTGCTTTG 1762 |||||| ||||| || || ||||||| || || |||||| || || || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1763 CCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTC 1822 ||| || || | |||||||||||||||||| || || ||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1823 ATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCTAGATGTCC 1882 |||||||||||||||||| |||||||| ||||| ||||| |||| || ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1883 ACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTGCCTGTTCTGCTATC 1942 ||||| || || |||||||||| || |||||||| |||||||| || ||||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1943 ACCCTCGATGATAATACTGTTAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTC 2002 ||| || | | ||||| |||||| |||| | ||| || | || ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2003 GGACACCCATACTTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGA 2062 ||||| ||| ||| ||| || || | ||||| | | |||| ||||||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2063 GATATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTAGAATTTAAATTATGAAA 2122 | ||| || || || |||| || || |||| ||||||| |||||| ||||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2123 CTGTAAAATATAATCTTTCGGTGCTAATTCTTTAATGAT-TCTAAGAGCCTCTGACTTAC 2181 ||||| ||||||||| || | ||| |||| || |||||| || ||| ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAG 6281 Query 2182 TGCCTGCGTTAAGTGCTGCTGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCTC------ 2235 || | || || ||| |||||||| | ||||| || |||||||| || |||| Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2236 TTGCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTTATCGA 2295 |||||||||||||||| ||||| || || |||||||| || || ||||||| || |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2296 TGTAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTG 2355 | || ||||| || | || ||||||| ||||||| |||||||||||||||||||||| Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2356 ATCTACTTGGGGATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCGA 2415 | || |||| || | || ||||||||||||||||||||||| |||||| ||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2416 ACTGAACAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGGAGC-TCTCTGCAAATTTTA 2474 | || | ||| | || ||| ||||||||| || || | |||| ||||||||||| || Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTG 5982 Query 2475 ATGTATAATTTATTTACAGGAGTTTCGAGGGTTTG--TAGTTGGGAAAGTGCTTCGGATA 2532 |||||| || ||||| || || | ||| |||| || || || || ||||| | Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTT 5924 Query 2533 AAGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTT 2572 | |||||| || |||||||| || || ||| |||||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702232653700