Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006358.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq9745 248 1e-62 >seq9745 Length=7305 Score = 248 bits (274), Expect = 1e-62 Identities = 544/806 (67%), Gaps = 18/806 (2%) Strand=Plus/Minus Query 1555 GCCCAGTCATTGATTGCTTTGTTCTTTTCCTCTTCGAAGAACTCCTTATATGAAGATTGT 1614 |||||| || || ||| |||||| || || || | ||||| ||||| || | Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1615 GGACCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCG 1674 || || |||||||| ||||||||||| || || || ||||||| || || || || ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1675 TACTTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGTTTGAGG 1734 || | | || | ||||| || || | ||||||||| |||||||| | |||||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAA 6657 Query 1735 AAGTGCGGATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACTTTTGGG 1794 | ||||||| |||| |||||||||||| ||||| |||| ||| ||| ||||||| Sbjct 6656 TAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGG 6597 Query 1795 CTAAGATCCAAATGCCCACACAGATAATTGTGAGGGCCTAAACTCCTGGCCCATAATGTT 1854 || | ||| |||| || || | |||||||| |||||||| || ||||||| |||| Sbjct 6596 CTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTT 6537 Query 1855 TTACCTGTTCTGGATGGGCCTTCGATTATTATGGATATAGGTCTGAAAGGCCGCGCAGCG 1914 || || ||||| | ||||| | | ||| ||||||| | ||||| | ||| | Sbjct 6536 TTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAG 6477 Query 1915 GAATCGGCCACATTTGTTGTGACCCAATCTGTTAATGCT-TCCGGTACATTGTTAAACGT 1973 | | | || ||| | ||||| ||| | || | |||||||| |||||||| || Sbjct 6476 GCACTCACAACGTTTTCTTCAACCCAGTCT-TGAAGAATCTCCGGTACGTTGTTAAATGT 6418 Query 1974 CGTCGTTTGGAATGGCGGCATGTATACTGTTGTTGGTGGAGC---GAATATTCGCTCTAG 2030 | | | || || | | |||| ||| |||||||| |||||| || | Sbjct 6417 ACTGGATACAAAAGGAGAAACATATA---TTGCAGGTGGAGCCTGGAATATCATATCCAA 6361 Query 2031 ATTAGCGTTAAGATTATGATACTGTAAAACATAATCTTTTGGAAGTAATTCCTTAATTAT 2090 |||||| || | ||||| | ||||| |||||||||||| || |||| ||||||| Sbjct 6360 ATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTAT 6301 Query 2091 -TGTGAGAGCTTCGTCCTTACCTCCGCTGTTAAGTGCTTTAGCGTATGCATCGTTTGCGG 2149 | | || ||| | ||| || || || |||| ||||| |||| || || | Sbjct 6300 CTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCG 6242 Query 2150 ATTGTTGTCCTCCTC------TGGATGATCGGCCGTCGATCTTGAATTCACCCCATTC-G 2202 ||||||| || |||| | | |||| || || |||| |||||| ||||| || Sbjct 6241 ATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAA 6182 Query 2203 CAGAATACTCCATCTTTTTCGATGTACGATTTGGCGTCGGAGGAGGAGCGTGCAGTCTGT 2262 | || |||| | || ||||| ||||| || ||| |||| ||| | |||| Sbjct 6181 TTGTAT-CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGT 6123 Query 2263 ATATTACAATGGTATTGTTGTGATGAATTTGGATTGGATAGATCGAACAATCTGCAGTTC 2322 || || |||| | ||| ||| ||||| | |||||||| |||||| ||| Sbjct 6122 ATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTC 6063 Query 2323 GTGCATCTGTACTTCTTCTGGAATTG 2348 |||||| |||||||| | |||||| Sbjct 6062 GTGCATGTGTACTTCCCTTCGAATTG 6037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8527870979400