Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006384.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq9745 563 1e-157 >seq9745 Length=7305 Score = 563 bits (624), Expect = 1e-157 Identities = 725/991 (73%), Gaps = 18/991 (2%) Strand=Plus/Minus Query 1605 CTGCATTCTTTATTGCCCAGTTTTTAAGTGCGCTGTTCCTCTCTTCGTCCAAGAATTCTT 1664 ||||||| | | |||||| |||| || |||| | |||||||| | || |||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1665 TATATGATGATGTTGGG-CCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAATT 1723 |||| ||| |||||| ||||||||||| |||||||| || || || || ||||||| | Sbjct 6790 TATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACT 6732 Query 1724 TGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCT 1783 | || || || ||||| | | || ||||| || |||| ||||||||||||||| Sbjct 6731 TAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCC 6672 Query 1784 TTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTA 1843 ||||| || |||| ||| | || || |||| |||||||||||| ||||| |||||||| Sbjct 6671 TTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1844 TTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGAT 1903 ||||| ||||||||||| |||| ||| || || || ||||||||||| || | |||| Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1904 CTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCACAATACTTTTGGGTCTC 1963 || ||||| |||||||| || || | | |||||||||| || ||||| | |||| Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 1964 CAAGGCCGCGCAGCGGCAC-CACTCACATTTTCAGAAACCCACTCTTCAAGTTCTTCTGG 2022 ||||| | ||| ||||| ||| || ||||| |||||| |||| ||| || || Sbjct 6491 TGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGG 6433 Query 2023 AACTTGATCGAATGAAGAAGAAAGAAATGGACAAACAAAAACCTCTAAAGGAGGTGCA-- 2080 || | | |||| | || | ||| ||| ||||| | | | ||| || || Sbjct 6432 TACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC---AGGTGGAGCCTG 6376 Query 2081 -AAAATCCTATCTAAGTTAGAGTTTAAATTATGAAATTGTAAAACATAGTCTTTAGGAGC 2139 || ||| |||| || |||| ||||| ||||||| ||||| ||| ||||| || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2140 TAACTCCTTAATTA-CTCTAAGAGCCTCAGACTTACTGCCGCTGTTAATTGCCTGGGCGT 2198 | ||| |||||| ||||||| || | | ||| || || | || | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2199 AAGCGTCATTGGCTGTCTGTTGTCCCCCTCTTG------CAGAGCGTCCGTCGATCTGAA 2252 || | ||||| || | ||||| |||||||||| |||| | ||| || ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2253 ACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGGTAGGACTTGACGTCGGAGCTGG 2312 | |||||||| || | || ||||||| |||||| | || ||||| |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2313 ATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGA 2372 ||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||| || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2373 AGAATCTGTTATTTTGGCATTTGTATTTGCCTTCAAATTGGATAAGCACGTGGAGATGAG 2432 ||||||||||||| |||| |||| || ||||| ||||||||||||||||||||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2433 GGCTCCCATCTTCATGAAATTCGCTGCAGattttgatgtattttttatttgttggggtgt 2492 | || | ||||||| ||| ||||| || ||||||||||| || ||| |||||| | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2493 ttaggttttttatttgGGAAAGTGCCTCTTCTTTAGTAAGAGAGCATTGTGGATAAGTGA 2552 ||||||||| || || || || || ||||| ||||||||||| || ||||| || | Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2553 GGAAATAGTTTTTGGCATATATTTGAAAACG 2583 | ||| ||||| | | | || ||||||| Sbjct 5896 GAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8562743314260