Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006631.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq9745 381 1e-102 >seq9745 Length=7305 Score = 381 bits (422), Expect = 1e-102 Identities = 673/979 (69%), Gaps = 18/979 (2%) Strand=Plus/Minus Query 1596 CGAAGATCGCATTCTTGATAGCCCAGTTTTTGAGTGCGGTGTTCTTGTCCTCGTCGAGGA 1655 |||||| ||||| ||| ||||||| || | || | |||||| || ||||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1656 ATTCTTTATAACTGCTGTTGGGACCAGGATTGCATAGGAAGATTGTCGGTATTCCGCCTT 1715 | ||||||||||| |||||| || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1716 TAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1775 ||| || || ||||| ||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1776 ACTCTTTAAAGTGCTTGAGGAAGTGCGGGTTGACGTCATCAATGATGTTATACCAAGCAT 1835 | || ||||| || || | | |||| | |||| |||||||| ||| ||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1836 CATTGCTGTACACTTTGGGACTTAAGTCTAGATGGCCACACAAATAGTTGTGTGGGCCTA 1895 ||||| ||||| ||| || |||| || ||| || || || || ||||||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1896 GCGACCTAGCCCACATCGTCTTCCCGGTCCGACTATCTCCCTCGATGACTATACTTTGAG 1955 || |||||||| || || ||||| || | | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1956 GTCTAAGGGGCCGCGCAGCGGCATCGACAACATTCTCGCACGCCCACTCTTCAAGTTCTT 2015 ||| | |||| | ||| |||| ||||| || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2016 CTGGAACTTGATCAAATGAAGANNNNNNNNNNNGAGAAACATAAGGAGCTGGTGGCTCTT 2075 | || || | | ||||| | |||||||||| || ||||| | | Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2076 GAAAATACCTATCTAAATTTGAATTTAAATTATGAAATTG-AAGTAGAAAGTCTCTTGGG 2134 | || | |||| ||||| | |||||| ||||||| | || || | | ||| ||||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA-ATAATCTTTTGGG 6318 Query 2135 GCTTTCTCCTTCAATATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCA 2194 ||| ||| | | ||| | | ||| | ||| ||||| | || | || || || Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2195 TATGCGTCGTTGGCAGTCTGGCAACCTCCTC------TAGCTGATCTTCCATCGACTTGG 2248 || | || || || | || ||| |||| | || ||||||||||| | ||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2249 AAAATTCCATGATCAAGGATGTCTCCGTCTTTCTCCACGTAGGTTTTGACATCGCTTGAG 2308 || ||| ||||| | ||||||| ||||| | || | || || | | ||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAG 6141 Query 2309 CT---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGG 2365 || |||| ||||||| ||||||||||||||||||| ||||||| |||| || || Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2366 TCGAAGAATCTATTGTTTCTACACTGGAATTTCCCTTCGAACTGGATGAGAACATGCAGG 2425 ||||||||||| || || | || | | ||||||||||| ||||| || || || || Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2426 TGAGGATTCCCATTTTTATGAAGCTCTCTGCAGATTCTAATGAATTTTATGGAAGTTGGG 2485 |||| | || |||| |||| |||||||| || | ||| |||| || |||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2486 GTTTGGAGATTT--AATAATTGGGAAAGTGCCTCTTCTTTTGTGAGGGAGCACTTGGGAT 2543 || | || ||| ||||||| || || || || |||||||| || ||||| | ||||| Sbjct 5960 GTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2544 AAGTGAGGAAATAATTTTT 2562 | || || ||| |||||| Sbjct 5902 ATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8600785861380