Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006874.1 Length=2777 Score E Sequences producing significant alignments: (Bits) Value seq9745 614 9e-173 >seq9745 Length=7305 Score = 614 bits (680), Expect = 9e-173 Identities = 736/999 (74%), Gaps = 10/999 (1%) Strand=Plus/Minus Query 1587 TGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTAATTGCCCACTGCTTGAGTG 1646 |||| ||||||| | |||| ||||| ||||| | | ||||| ||| | | Sbjct 6880 TGAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAG 6821 Query 1647 CTGCGTTCCTTTCCTCGTCCAGAAATTCTTTATAGGACGACGTTGGG-CCTGGATTGCAT 1705 |||||||| | || ||||| ||||| |||||||| || |||||| ||||||||||| Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAA 6762 Query 1706 AGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTT 1765 |||||||||||||| || |||||||||| || || ||||| ||||| || | || Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1766 TGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACG 1825 ||||| || || | || ||||| ||||||||||| || |||| |||| |||| || ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1826 TCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGG 1885 | |||||||||||||||||| ||||||||| ||||| |||||||| | |||| ||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1886 CCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTA 1945 || ||||| || || ||||| || ||||| || ||||| ||||| || || || | | Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1946 TCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGCGGCATCCATCACGTTC 2005 ||||| || | || ||||| | |||| |||| | ||| |||| || ||||| Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2006 TCACTCACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGA 2065 || ||||| |||| ||| ||||| || | ||||| | | |||| ||||||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2066 GAAACATAAGGAGCCGGAGGCTCCTGAAAAATCCTATCTAAATTNNNNNNNNNNNNATGA 2125 |||||||| || || || |||| || ||| |||| ||||| |||| Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2126 AATTGTAAAACAAAATCCTTAGGGGCTAATTCCTTAATGA-CTCTAAGAGCCTCTGACTT 2184 || ||||| | |||| || ||| | |||| |||| | ||||||| || ||| || Sbjct 6341 AAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTT 6283 Query 2185 ACTGCCTGCGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGCCCTCCCCTTG- 2243 | || | || || ||| | |||||| | ||||| || |||||||| || || |||| Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2244 -----CAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTTGTC 2298 ||||||| ||||| || || ||||||||||| || || || ||||||| ||| || Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2299 GATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGC 2358 |||||| ||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2359 TGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTACCTTC 2418 |||||||||||| || || || ||||||||||| | ||||||||| |||||| ||||| Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2419 GAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTT 2478 ||||||||||||||| ||||| ||||||||| || || ||| ||||||||||| || Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2479 GATGAACAGTTTATTTACTGGGGTTTGTAGGGATTGTATTTGGGAAAGTGTTTCCTCTTT 2538 |||| | || ||||||||||| | |||| ||| || || || | ||||||||| Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTT 5923 Query 2539 GGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTT 2577 || |||||||| | ||||| || || ||| |||||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695892229180