Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006876.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq9745 571 1e-159 >seq9745 Length=7305 Score = 571 bits (632), Expect = 1e-159 Identities = 694/938 (74%), Gaps = 12/938 (1%) Strand=Plus/Minus Query 1649 gCGTTCTTTTCCTCGTCTAGGAACTCTTTATACGAGGATGTTGGTCCTGGATTGCAGAGG 1708 |||||||| || ||||| || ||||||||||| || | |||||||||||||| ||| Sbjct 6818 GCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGG 6759 Query 1709 AAGATTGTGGGAATCCCGCCTTTTATTTGAATTGGCTTCCCGTA-CTTCGTGTTGCTTTG 1767 ||||||||||| ||||||||||| | || || ||||| ||||| |||| | || || Sbjct 6758 AAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTG 6700 Query 1768 CCAGTCCCTTTGTGCCCCCATGAATTCTTTAAAGTGTTTCAGGTAATGCGGATCTACGTC 1827 ||| || |||| |||||||||||||| ||||| ||||| | ||| ||||||| |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1828 ATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGGTCAAGATGGCC 1887 |||||||||||||||||| ||||||||| ||||| |||||||| | ||| ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1888 GCATAGGTAATTATGTGGACCCAATGATCTGGCCCACATTGTCTTCCCGGTTCGACTATC 1947 ||||| |||||| ||||| || |||||||| ||||| ||||| ||||| |||| | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1948 ACCTTCAATCACAATACTAATCGGCCTCCATGGCCGCGCAGCGGCATCCATGACGTTCTC 2007 |||||| | || ||||| || || | |||| | ||| |||| || ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2008 GCACGCCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGA 2067 |||| |||| ||| ||||| || | ||||| | | |||| ||||||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2068 AATATAAGGAGCCGGTGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGGAA 2127 || ||| || ||||| |||| || ||| |||| |||||| |||||| |||| || Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2128 TTGCAACACAAAATCCTTTGGTGCTAATTCCTTAATGA-CTCTAAGAGCCTCTGACTTAC 2186 | || | |||| ||||| | |||| |||| | ||||||| || ||| ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAG 6281 Query 2187 TGCCTGTGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGACTGTTGCCCTCCCC------ 2240 || | || || ||| | |||||| | ||||| || || ||||| || || | Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2241 TTGCAGATCTTCCATCGATCTGAAATTCTCCCCACTCGAGGGTGTCTCCGTCCTTGTCGA 2300 |||||||||||||||| ||||| ||||||||||| || | || ||||||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2301 TGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTACTG 2360 | || ||||| |||| ||||||||||||| ||||||| ||||| |||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2361 ACCTGGTTGGGGACACCAGGTCGAACAGTCTGCAATTTGTG-ATGCGGATTTTCCCTTCG 2419 |||||||||| || || || ||||| | |||| ||| ||| ||| | | ||||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTA-CTTCCCTTCG 6042 Query 2420 AACTGGATAAACATGTGGATGTGAGGTTCCCCATTCTGGTGGAGTTCCTTGCAGATTTTG 2479 || ||||||| || ||||| ||||||||| || | || ||| |||| || ||| Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2480 ATGAATTTAGGGTTTGAAGGAAGAGATAGGTTTTGAATTTGGGAAAGTGTTTCCTCTTTG 2539 ||| |||| |||| || | |||||||||||| || || | ||||||||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTT 5922 Query 2540 CTGAGAGTGCATTGTGGATAAGTGAGGAATATGTTTTT 2577 | |||| ||| || ||||| || || || || ||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8667360318840