Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006995.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq9745 542 5e-151 >seq9745 Length=7305 Score = 542 bits (600), Expect = 5e-151 Identities = 720/990 (73%), Gaps = 21/990 (2%) Strand=Plus/Minus Query 1588 GTGAG-AATGATGAAGGTTGCATTTTTTAATGCCCACTCCTTTAAAGCACTGTTTTTATC 1646 ||||| |||| |||| ||||||| | | ||||| ||| | ||| ||| ||||| Sbjct 6866 GTGAGGAATGC-GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATC 6808 Query 1647 CTCTTCCAAGAATTCTATATATGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGG 1706 || || | || ||| |||| ||| | |||||||||||||| |||||||| ||||| Sbjct 6807 TTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGG 6748 Query 1707 AATTCCACCTTTAATTTGAATTGGCTTTCCGTATTTTGTATTTGACTGCCAGTCCCTTTG 1766 || || ||||||| || || |||||||||||| || |||| ||||||| || |||| Sbjct 6747 CATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTT 6688 Query 1767 GGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCGATGACGTT 1826 ||||||||||||||| ||||| || |||| || | |||||||||| ||| |||||||| Sbjct 6687 GGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTT 6628 Query 1827 GTACCAGGCGCTGTTCGAATATACCTTGGGGCTTAAGTCTAGGTGTCCACATAAGTAATT 1886 ||||||||| || || || ||||||| || || || ||||||||||| Sbjct 6627 GTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATT 6568 Query 1887 GTGTGGCCCCAGAGACCTGGCCCACGCGGTCTTACCTGTACGACTATCACCTTCGATCAC 1946 |||||| || | || || ||||| || || || || | | |||||||| | || Sbjct 6567 GTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAAC 6508 Query 1947 GATACTTTTAGGTCTCCACGGCCGCGCAGCGGTGTCTCTTACA---TTTTCTGATACCCA 2003 ||||| |||||| |||| | ||| || | || ||| |||||| ||||| Sbjct 6507 TATACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCCA 6451 Query 2004 ATCCTTTAGTTCATCTGGGACTTGAGTGAATGT--TGAATTATGAAAAGGAGAAACATAT 2061 || | || || || || | | ||||| || || |||||||||||||||| Sbjct 6450 GTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGAT--ACAAAAGGAGAAACATAT 6393 Query 2062 ACCTCTGATGGAGGCTTGAAGATCCTATCTAGATTATTATTTAGGTTATGAAATTGTAAA 2121 | | | ||||| || ||| ||| |||| | |||| ||||| ||||||| ||||| Sbjct 6392 ATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAA 6333 Query 2122 ACATAGTCCTTTGGGACTAGTTCTTTAATAATCTCAAGAGCCTCATG-CTTACTTCCCGC 2180 ||| || |||||| | ||| |||| ||||| | || || || ||| || | Sbjct 6332 TAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA-AGGCTGCTGTTTTAGACCCAGA 6274 Query 2181 GTTAATTGCCTGGGCGTAAGCATCGTTTGTAGATTGTAGACCCCCTC------TTGCAGA 2234 || | || | |||||| |||| || | |||||| ||||||||| ||||||| Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2235 TCGTCCGTCGATCTGAAATTCTCCCCATTCGATTGTGTCACCGTCCTTGTCCAGATAGGA 2294 || ||| || ||||| ||||||||||| || ||||| || |||| ||| || | ||| || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2295 CTTGACGTCGGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATGTGTTGACCTGGT 2354 ||| |||| |||||| |||||| ||||||| || |||||||||||||||||||||||||| Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2355 TGGGGAGACCATGTCGAAGAATCTGTTATTCGAGCATTTGTATTTCCCCTCGAATTGCAT 2414 ||| ||||| | ||||||||||||||||||| |||| |||| ||||| |||||||| || Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2415 AAGCACGTGGAGATGAGGGCTCCCATCCTCGTGTAATTCTCTGCAGATCtttataaattt 2474 ||||||||||||| |||| || | || || ||||||||| ||||| || |||| Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2475 tttattaattggagtttttaggtttttgatttGGGAAAGTGCTTCCTCTTTGGTGAGGGA 2534 || || | ||| || |||||||||| || || || ||||||||||| || || || Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGA 5914 Query 2535 GCAATGTGGATATGTGAG-GAAATAGTTTT 2563 ||| || |||||||| || ||||| |||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8597615649120