Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007210.2 Length=2758 Score E Sequences producing significant alignments: (Bits) Value seq9745 401 1e-108 >seq9745 Length=7305 Score = 401 bits (444), Expect = 1e-108 Identities = 557/775 (72%), Gaps = 15/775 (2%) Strand=Plus/Minus Query 1601 TGGCTCTGAGAGGAAGACGAATTCTGCATTCTTCAGTGCCCAGGACTTCAAAGCTGAATT 1660 ||||| | |||||| |||| ||||||| | || ||||||||||| | ||||| || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1661 CTTATCCTCGTCGAGATATTCCTTATATGATGATGTCGGTCCCAGGATTGCATAGGAAGA 1720 |||||| ||||| ||| | || ||||| ||| | ||||| |||||||| ||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCT-GGATTGCAAAGGAAGA 6755 Query 1721 TTGTCGGAATGCCCCCTTTAATTTGAATGGGCTTGCCGTACTTGGTGTTGCTTTGCCAAT 1780 |||| || || || ||||||| || || |||||| ||||| | | || ||||||| Sbjct 6754 TTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAAT 6695 Query 1781 CCCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCAACATCATCGA 1840 | | || ||||||||||||||||||||| || |||| ||| | || ||||| | ||| | Sbjct 6694 CACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAA 6635 Query 1841 TGACGTTATACCATGCGTCATTTGAGTAGATCTTGGGGCTCAAGTCTAGATGCCCACAAA 1900 ||||||| ||||| || ||||| ||| | || ||||| | || ||| || || | Sbjct 6634 TGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1901 GGTAATTATGTGGGCCTAGTGATCTGGCCCACATTGTCTTCCCAGTTCTACTCTCTCCCT 1960 |||||| |||||||||| |||||| ||||| ||||| |||||||||||| ||| || | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1961 CTACTACTATACTGACCGGTCGCCAAGGCCGCGCAGCGGCATCCCTGACATTCTCCTCCG 2020 |||| |||||||| | ||||| ||||| | ||| |||| | || || || || Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA 6455 Query 2021 CCCAACATTCAAGTTCTTCCGGAACTTGATCGAATGAAGAAGCTAAAAAAGGAGAAACAA 2080 |||| || ||| ||||| || | | |||| | | || ||||||||||||| Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2081 AAACCTCTGCAGGAGGTGC---AAAAATCCTATCTAAATTAGAATTTAAATTGTG-AAAC 2136 | | |||||| || || || ||| |||| ||||||| |||||| | || |||| Sbjct 6394 ATA---TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2137 TGAAATATATATTCTTTAGGTAATTTTTCTCTAATAATAGATAAAGCAGCTTCCTTTGAA 2196 ||||| ||| ||||| || |||||| ||||| || ||| || ||| || || Sbjct 6337 GTAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGAC 6279 Query 2197 CCTGCATTCAGCGCTTCTGCTGCTGCATCATTAGCCGTCTGCTGACCTCCTC------TA 2250 || | ||| || |||||||| |||||||||||| || ||||| |||| | Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2251 GCAGATCTTCCGTCGACTTGAAAAACACCCCAGTCGACGTAATCACCGTCCTTCTCGATA 2310 ||||||||||| || | || || | ||||| || | ||| |||| |||||||||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2311 TAGGACTTGACATCAGAACTGGACTTGGCTCCTTGGAAGTTCGGATGGAATTGTG 2365 || ||||| || | || ||||| || |||| || | ||| |||||||| |||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8635658196240