Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007211.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 390 2e-105 >seq9745 Length=7305 Score = 390 bits (432), Expect = 2e-105 Identities = 661/943 (70%), Gaps = 26/943 (3%) Strand=Plus/Minus Query 1603 GGCTGGTTGATGGTGACGAAGGTCGCATTCTTTATGGCCCAGTTTTTTAGACCTATGTTT 1662 |||||| ||| | ||||| ||||| | | |||||| || | | || ||| Sbjct 6872 GGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTC 6813 Query 1663 TTCTCCTCATCAAGGAACTCTTTATAGGAGGATGTTGGACCAGGATTGCAGAGGAAGATT 1722 || || || ||||| ||||||||||| || | || || |||||||| ||||||||| Sbjct 6812 TTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATT 6753 Query 1723 GTTGGGATCCCGCCTTTAATTTGAACGGGCTTCCCGTATTTTGTATTGGACTGCCAATCC 1782 || || ||||||||||||| || || |||||| |||||| || |||| |||||||||| Sbjct 6752 GTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCA 6693 Query 1783 CTTTGGGCCCCCATGAATTCCTTGAAATGTTTTACATAGTGAGGATCAACATCGTCTATT 1842 |||| |||||||||||||||||| |||||||||| ||| | |||||||| | || || Sbjct 6692 CTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATG 6633 Query 1843 ATGTTATACCAGGCTTCGTTGCTGTAAACCCTAGGACTAAGGTCAATATGACCGCATAAG 1902 | ||| |||||||| || ||| |||| | || || | ||| ||||||||||||| Sbjct 6632 ACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG 6573 Query 1903 TAATTATGTGGACCTAATGATCTAGCCCACATGGTTTTCCCAGTCCTGCTGTCACCTTCT 1962 ||||| ||||| ||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 6572 TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCT 6513 Query 1963 ATAACTATACTTATTGGTCTCCATGGCCGCGCAGCGGCAGACATTACATTGTCTGCGGCC 2022 | ||||||||| || |||| |||| | ||| |||| || || || ||| | || Sbjct 6512 ACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACC 6453 Query 2023 CATTCTTCAATCTCTTCAGGGACTTGATCAAACG--ATGAACAATTAAATGGACTAATGT 2080 || |||| || || || || | | ||| | || | | ||| ||| || | Sbjct 6452 CAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATA--CAAAAGGAGAAACAT 6395 Query 2081 ACTCTTCAATAGGAGGCATGAAAATGCGTTCCAGATTAGCATTTAAATTATGAAATTGTA 2140 | | || |||| | ||| || |||| |||||||||||| ||||||| ||| Sbjct 6394 ATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTA 6335 Query 2141 ATACATAGTCCTTAGGAGCTAACTCCTTAATTACATCAAGAGCT--TGATCCTTATTGCC 2198 | ||| || || || | ||| |||||| || | ||| || | ||| || Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTT--TTAGACCC 6277 Query 2199 TGTGTTAATTGCTCTTGCGTAAGCATCGTTTGCTGTCTGTTGTCCCCCTC------TTGC 2252 | || | ||| ||||||| |||| || || | ||||| ||||||| |||| Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2253 AGATCTTCCATCAATCTGGAAGGTGCCCCAGTCAAGTATGTCCCCGTCCTTCTCGATGTA 2312 |||||||||||| |||||||| ||||| |||| | | || |||| ||||||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2313 TGCCTTAACGTCTGAACTGGACTTAGCATCGGTG-ATGAAGCAGTGGTATTGGGAGGA-G 2370 | ||| |||| || ||||| ||| | || || ||| ||| | || | || Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTA-CCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2371 GAGTTGG-GTGACTGTAAG-TCGAAGAATCTCGGATTCGTG-AGGTCGAACTTGCCCTCG 2427 ||||| | ||| ||| ||||||||||| ||||||| | || | |||| || ||| Sbjct 6097 TGGTTGGAGAGAC---AAGATCGAAGAATCTGTTATTCGTGCATGT-GTACTTCCCTTCG 6042 Query 2428 AATTGCACAAGAGCATGGAGATGAGGGTTTCCATCCTCGTGTAGTTCTCTACAAACCCTA 2487 ||||| | ||| | |||||| |||| | | | || || |||||| |||| | | Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2488 ATGAATTTCTTGTTTACAGGGGTTTGTA--TATTGAGTAATTG 2528 ||| ||||||||||||| ||||| | || | |||| |||||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860