Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007290.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 527 1e-146 >seq9745 Length=7305 Score = 527 bits (584), Expect = 1e-146 Identities = 684/946 (72%), Gaps = 10/946 (1%) Strand=Plus/Minus Query 1649 TCCTCGTCGAGAAATTCTTTATAACTGCTGTTGGGACCTGGATTGCAGAGGAAGATTGTC 1708 || ||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1709 GGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTT 1768 || ||||||||||||| || || ||||| ||||| || | || | ||||| || ||| Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1769 TGGGCCCCCATGAACTCCTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACG 1828 | |||||||||||| |||||||| || || | || ||||||| |||| |||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1829 TTATACCAGGCGTCGTTATTGTAGACCTTGGGACTCAGGTCCAGATGTCCGCATAAATAG 1888 || |||||||| || || ||||| || || || | || ||| |||||||| || Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1889 TTATGTGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATT 1948 || ||||| || | |||||| ||||| || || ||||| |||| | || || || | Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1949 ACTATACTTCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCGATGGCCCAA 2008 |||||||| ||||| | |||| | ||| |||| |||||||| || |||| Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAG 6450 Query 2009 ACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGANNNNNNNNNNNNNNNNNCATAAGGA 2068 ||| ||| || || || | | ||| | | |||| Sbjct 6449 TCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATT 6390 Query 2069 GCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACA 2128 || ||||| |||| || ||| | || | ||| |||||||| ||||||| ||| | Sbjct 6389 GCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAA 6330 Query 2129 AAATCTTTAGGAGCTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTTCCCGCGTT 2187 ||||||| || | |||| |||| | ||||||| || ||| ||| || | || Sbjct 6329 TAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATT 6271 Query 2188 AAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTG------CTGATCT 2241 || ||| | |||||| | || || || | ||||| || ||||||| | ||||| Sbjct 6270 TAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT 6211 Query 2242 TCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAGTCCTT 2301 |||||| ||||| || |||||||| || | || ||||||| ||| ||||| || ||| Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2302 GACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGG 2361 || | ||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||| Sbjct 6150 CACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGG 6091 Query 2362 GGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAG 2421 || || || ||||||||||| | ||| ||| |||||||||||||||| ||||| || Sbjct 6090 AGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAG 6031 Query 2422 CACGTGAATATGAGGTTCCCCATTTTCATGGAGCT-CTCTGCAGATCTTGATGAATTTTT 2480 |||||| | | ||||||||| |||||||| |||| ||||||| ||||||||| |||| | Sbjct 6030 CACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2481 TATTTGTAGGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGC 2540 | ||| || || | ||||||||||| || || ||||| |||||||||||||||| Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGC 5912 Query 2541 AATTTGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACG 2586 | | ||||| || || ||| |||||| ||| ||| ||||||| Sbjct 5911 AGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420