Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007339.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq9745 414 2e-112 >seq9745 Length=7305 Score = 414 bits (458), Expect = 2e-112 Identities = 685/980 (70%), Gaps = 23/980 (2%) Strand=Plus/Minus Query 1592 GAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGCATTCTTTTCTTCATCGAGATA 1651 ||||| |||||| | | ||||| ||| | ||||| ||||| ||||| || ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1652 TTCTTTGTAACTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATCCCACCTTT 1711 ||||| ||||| ||| |||||| |||||| |||||||| ||||| ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1712 AATCATGACTGGCTTTCCGTA-CTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1770 || | ||||||||||| |||| | || ||||| || |||| ||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1771 ATTCTTTAAAATGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCAAGCAT 1830 |||| |||||||| |||| ||| | |||||||||| |||||||||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1831 CATTATTGTATACTCTCGGGCTTAGATCTAGATGGCCGCACAAGTAATTGTGTGGTCCTA 1890 |||| ||||| | | ||||||| ||| ||| ||||| |||||||||||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1891 ACGAACGCGCCCACGCTGTTTTGCCCGTCCTACTATCACCCTCTAATACTATTCCTATGG 1950 | || | ||||| |||||| || || ||| ||||| |||| ||||| | || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1951 GTCTATTCGGGCGCGCAGCGCAACACCCCACATTACTTGAAACCCAATC--GACGAGTTC 2008 ||| | || | | ||| | || | | || || | |||||| || || || | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAAT-- 6439 Query 2009 TTGCGGAACTCTGTCGAAGGATGAAATTGA---AAAAGGAGAAACATACACCTCAGCACG 2065 | ||| || ||| | ||| | | || ||||||||||||||| | ||| | Sbjct 6438 CTCCGGTACGTTGTTAA---ATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGG 6382 Query 2066 AGGTGGAAAAATACGATCTAAATTCGAATTCATATTATGAAATTGCAAAACGTAATCTTT 2125 || | || || ||| ||||| | ||| | ||||||| | ||| |||||||| Sbjct 6381 AGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTT 6322 Query 2126 GGGTGCTAATTCTTTCAACACTTTCAATGCATCTTCTTTGTTTCCTGTATTTATTGCTCT 2185 || | ||| | | | | || || || ||| || | ||||| ||| Sbjct 6321 TGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2186 TGCGTACGCGTCGTTAGCTGTTTGTTGACCTCC------ACGAGCAGATCGTCCATCGAT 2239 |||||| | || ||||| | ||||||||| || | ||||||| |||||| || Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2240 CTGGAAGACACCCCATTCTAACACGTCCCCGTCTTTGTCGATGTATTGTTTGACGTCCGA 2299 |||||| | ||||| || | || |||| || ||||| || || |||| || Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA 6142 Query 2300 TGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCGACTTGGGGACACCAA 2359 |||||| ||||||| ||||| ||||||||||||||||||| |||| || || | Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2360 GTCGAAGAATCTGTTATTCTTGCATTGGAACTTTCCTTCGAACTGGATAAGAACGTGGAT 2419 |||||||||||||||||| ||||| | |||| |||||||| |||||||| ||||||| Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2420 ATGCGGAGCCCCATCTTCGTGCAACTCTCTGCAAATTTTGATAAATTTCTTCGAAGTTGG 2479 | | || ||| | ||| || ||||||||||| ||||| ||||||| ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2480 AGTTTCTAGGGTTCG--CAATTGGGAAAGTGCCTCTTCTTTGGATAGAGAGCACTTTGGA 2537 || | |||| || | |||| || || || || ||||| | |||||||| | ||| Sbjct 5961 GGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2538 TATGTGAG-GAAATAGTTTT 2556 ||||| || ||||| |||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8565913526520