Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007638.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 619 2e-174 >seq9745 Length=7305 Score = 619 bits (686), Expect = 2e-174 Identities = 750/1015 (74%), Gaps = 16/1015 (2%) Strand=Plus/Minus Query 1589 AATGGCTCTGTGAGGGTGACGAACGAC-GCATTTTTTAAAGCCCACGTCTTTAAAGCGGA 1647 ||||||| |||||| |||| ||| |||||| | | |||||| | ||| | ||| | Sbjct 6875 AATGGCTGGGTGAGGAATGCGAA-GACTGCATTTATGAGAGCCCAGGACTTAATAGCTGC 6817 Query 1648 ATTCTTTTCCTCGTCCAGGTACTCTTTATAGCTGGAATTGGGCCCTGGATTGCAAAGGAA 1707 ||||| || ||||| || |||||||||| || || ||||| ||||||||||||||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1708 GATTGTTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCA 1767 |||||| || ||||||||||||| || || ||||| ||||| | |||| ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1768 GTCCCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGAAAATGGGGATCAACGTCATC 1827 || || | ||||||||| || || ||||| ||||| | | || | |||||||||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1828 GATGACGTTGTACCATGCGTCGTTGCTGTACACCTTTGGGCTTAGGTCTAGATGCCCACA 1887 |||||||||||||| || || ||| ||||| |||||||||| || ||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1888 CAAGTAATTATGTGGACCTAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACC 1947 |||||||| ||||| |||||||| || ||||| || || ||||| |||||| ||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1948 TTCTACCACTAAACTTAAGGGTCTCAGAGGCCGCGCAGCGGCCGCCACTACATTCTCGCA 2007 |||||| |||| ||| | |||| |||||| | ||| ||| ||| || || || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2008 CGCCCACTCTTCGAGTTCTTCCGGAACTCGATCAAAAGAA---GAGACAGAAAAAGGAGA 2064 |||| |||| || ||||| || | ||| | | || || ||||||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGAGA 6400 Query 2065 AACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAGTTAGCATTTAAATTATGAAA 2124 |||||| | | ||||| || ||| |||| || ||||||||||| ||||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2125 TTGTAAAACATAATCTTTAGGGGCTAGTTCCCTAAGTA-CTCTAAGAGCCTCCGGCTTAC 2183 ||||| ||||||||| ||| | |||||||| || ||||||| || | | ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAG 6281 Query 2184 TGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCCCCTC------ 2237 || | || || ||| | |||||| | || || || | ||||| ||||||| Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2238 TGGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGATGGTGTCGCCGTCCTTGTCGA 2297 | ||||||||||| || ||||| || |||||||| || || || || |||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2298 TGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTG 2357 | || ||||| || | ||||| |||||| ||||||| ||||| ||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2358 ACCGGTTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGA 2417 ||| | |||| ||||| || |||||||||| | |||| ||| |||| ||||| |||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2418 ACTGGATGAGCACGTGAATATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGACCTTAA 2477 | ||||| |||||||| | | ||||||||| || || || ||||||||| | ||| | Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2478 TGTATTTTTTGTTGGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTCTTTAG 2537 ||||||| ||||| |||||| ||||||||||| || || || | ||||||||| | Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTG 5921 Query 2538 TAAGAGAGCATTTGGGATAAGTAAGGAAATAATTTTTGCAATAAATGTTAAAGCG 2592 |||||||||| | |||||| || || ||| |||||| || ||||| ||| || Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980