Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007723.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 545 4e-152 >seq9745 Length=7305 Score = 545 bits (604), Expect = 4e-152 Identities = 686/938 (73%), Gaps = 18/938 (2%) Strand=Plus/Minus Query 1652 TTTTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1711 || || ||||| || | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1712 ATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAG 1771 || | ||| || || ||||||| || || |||||||||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1772 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGAGGATCAACGTCATCA 1831 || |||| ||||||||||||||| ||||| ||||||| |||| | |||||||||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1832 ATGACGTTGTACCAGGCGTCATTACTGTACACCTTTGGGCTAAGGTCGAGATGACCACAC 1891 ||||||||||||||||| ||||| ||||| |||||||| | || |||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1892 AAATAATTGTGTGGACCTAGTGACCTCGCCCACACCGTCTTGCCCGTTCGACTATCACCC 1951 || ||||||||||| |||| ||| || ||||| | || || || |||| | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1952 TGTATGACTACACTTACGGGTCGTAATGGCCGCGCAGCGGCAGACACCACATTCTCGGTA 2011 | || |||| ||| | ||||| |||| | ||| |||| ||| || || || | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2012 GCCCATTCTTCAAGTTCCTCGGGAACTTGATCAAAAGAAGAGGAAGAAAAAGGAGAAACA 2071 |||| |||| ||| ||| || || | | ||| | | ||| ||||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2072 TAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGT 2131 || | | ||||||| || ||| |||| |||||||||||||| ||||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2132 AAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGCAGCTTTGGACCAT 2191 ||| ||||||||| || ||| ||||| | || | | ||| || | ||| |||| Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCA 6276 Query 2192 GAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTC------TAGCT 2245 ||||| | || || || || | || || || ||||| ||||| |||| | || Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCA 6216 Query 2246 GATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAG 2305 ||||| ||||| |||||||| |||| ||||||| ||||||| ||||| | || Sbjct 6215 GATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATAC 6156 Query 2306 GCTTTGACATCTGTA-GAGCT---CTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2361 | || || ||| ||||| ||| ||||||| ||||| ||||||||||||| ||| Sbjct 6155 GACTTCAC----GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2362 CCGGGATGGGGAAACGAGGTCGAAGAATCGGTGATTTTTGCATTGGAATTTTCCCTCAAA 2421 || || ||| || || || |||||||||| || ||| ||||| | | || || || || Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2422 TTGGAGGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGTAGTTCTCTGCAAACCCTAAT 2481 ||||| |||||||| ||| ||||||||| ||||| || ||||||||||| | | || Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2482 AAATAATTTATTTACTGGAGTTTCTAAATGTTG--TAATTGGGAAAGTGCCTCTTCTTTA 2539 || || |||||||| || | || | ||| ||||| || || || || ||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2540 GTAAGAGAGCACTTGGGATATGTGAGGAAATAATTTTT 2577 ||||||||||| | ||||||||| || ||| |||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020