Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007724.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 554 8e-155 >seq9745 Length=7305 Score = 554 bits (614), Expect = 8e-155 Identities = 685/936 (73%), Gaps = 13/936 (1%) Strand=Plus/Minus Query 1643 GTTCTTTTCCTCGTCCAAGTACTCTTTATAGCTGGAATTTGGACCTGGATTGCAGAGGAA 1702 |||||| || ||||| | |||||||||| || || || || ||||||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1703 GATTGTGGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTTGACGGCCA 1762 ||||||||| ||||||||||||| || || ||||| ||||| | |||| || |||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1763 GTCCCTTTGGGCCCCCATGAACTCTTTGAAGTGCTTTAGGTAATGCGGATCTACGTCATC 1822 || |||| |||||||||||| || || || || |||| ||| ||||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1823 AATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTGAGATCTAGATGTCCACA 1882 ||||||||| ||||| || || ||| |||| | |||||||| | ||| ||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1883 TAAATAATTATGTGGTCCTAATGACCTGGCCCACATTGTCTTTCCCGTACGACTATCGCC 1942 ||| ||||| ||||| |||||||| || ||||| ||||| || || || | | || || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1943 CTCCACCACTATACTCATCGGTCTTAACGGCCGCGCAGCGGCACTCACAACATTATCGAC 2002 || || ||||||||||| |||| |||| | ||| |||||||||||| || || | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2003 CGCCCACTCCTCGAGTTCTTCTGGAACTCGATCAAAAgnnnnnnnNNNNNNNGGCGAAAT 2062 |||| || | || || || || | ||| | || |||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2063 ATAAACCTCCACTGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTGTGAAACTG 2122 ||| | | ||||| || ||| |||| |||||||||||||| | ||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2123 TAAAACAAAATCTTTGGGGGCTAACTCCCTAATTACAT-TAAGAGCCTCCGACTTACTTC 2181 |||| | ||||||| ||| | |||||||||| | |||| || | | ||| | Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACC 6278 Query 2182 CGCTGTTAAGTGCCTGGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCGAG------ 2235 | || || || | |||||| ||||||| || |||||||| ||||||| | Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2236 CAGATCGGCCGTCGACCTGGAATTGACCCCATTCAATGGTGTCTCCATCCTTATTGATGT 2295 |||||| || || | |||||||| ||||| ||||| || ||||| | ||| | ||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2296 AGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATC 2355 | ||||| || | ||||||||||||| ||||||| ||||||||||||||||||||||| | Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2356 GGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCTTCGAATT 2415 |||||| || || || ||||||||||||||||||||||| |||| || |||||||||| Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2416 GCATAAGCACGTGGAGATGAGGGTTCCCATTGTTGTGTAATTCTCTGCAAATTTTTATGA 2475 | ||||||||||||||| |||| | || || | || |||||||||||| || ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2476 ATTTTATATTAGTAGGGGTTTGCAGGTTTTG--TAATTGGGAAAGTGCTTCCTCTTTGGT 2533 |||| | || ||||| | |||||||| |||||| || || |||||||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGT 5920 Query 2534 GAGAGAGCACTCTGGGTATGTTA-AGAAATAATTTT 2568 |||||||| | || ||||||| | ||||| |||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860