Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007726.1 Length=2674 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 708/1033 (69%), Gaps = 36/1033 (3%) Strand=Plus/Minus Query 1560 CCACGATTTTAAAGCTGCATTCTCTTCTTTGTCGAGGAAATCTTTATAACT-GACTCCCT 1618 ||| || || | |||||| |||| |||| ||| || || ||||||||||| || | Sbjct 6834 CCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGG 6775 Query 1619 CACCAGGATTGCAGAGCACGATTGCTGGGATGCCAACTGTAATTTGAACTGGCTTTCCGT 1678 || |||||||| || | ||||| || || || || ||| || || |||||||||| Sbjct 6774 T-CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGT 6716 Query 1679 ATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAACT 1738 || | | ||| ||||||| || ||| || || || |||||||| | || ||||| Sbjct 6715 ATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA-- 6658 Query 1739 TTAGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGAAAACCT 1798 |||| |||| | |||| |||||||||||| ||| | || || | | | Sbjct 6657 ----ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTT 6602 Query 1799 TTGAGTTGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAATGCACGAGCCCACA 1858 ||| | | | || ||| || | |||||||| ||||||||||||| | |||||| | Sbjct 6601 TTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATA 6542 Query 1859 TCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCTTAGGTCTCAATGGCCGCG 1918 | || ||||| || || | |||||||| || | | |||| |||||| |||| | Sbjct 6541 TTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCC 6482 Query 1919 CAGCTGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATCTCGTCGGGAACGTTAG 1978 ||| | || || ||| | ||| || |||| ||||| | || || ||||| Sbjct 6481 CAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGT 6425 Query 1979 TGAAGGA---GGAGAGGGGAAACGGAGGAACCCATGGCTCCGG---AGCCTTTGAGAAAA 2032 | || | ||| | ||| |||| ||| || | || ||||| ||| | Sbjct 6424 TAAATGTACTGGATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATA 6371 Query 2033 TTCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAAGATATTTCTCCGGCAACTTCT 2092 | |||| ||||||| |||||| ||||||| | ||| ||| | | || || | Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2093 CTTTAATTATTTGAAGAGCCGTTCGTTTATCCGGAGCATTTAACGCCTCAGCTGCAGCGT 2152 | ||||||| | | || | | |||| | || ||||| || || || | | | Sbjct 6310 CCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2153 CATTAGCCGTATGCTGACCTCCTCTAGCACTT------CGTCCGTCGACCTGGAATTTCC 2206 ||||||||| || ||||| ||||| | | || | ||| || | |||||||| | Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2207 CCCATTCGAGAGTATCTCCGTCTTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAG 2266 |||| || | |||||||||| || ||||| || ||||| |||| ||| |||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2267 CTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTTGGGATACCAGGTCGAAGAGTC 2326 ||||||| ||||| ||||||||||||| |||||| ||| | || || || ||||||| || Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2327 TTTGATTTGTGCAGACGAACTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGTTCCC 2386 | | ||| ||||| | ||||||||||||| |||||||||||||||||| ||||||||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2387 CATCTTCGTGAAGCTCTCTGCAGATTTTAATGAATTTCTTATTTGTTGGAGTATTTATGG 2446 | ||| ||| |||||||| || || ||| ||||||| ||| ||| ||||||| | Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2447 TTTG--TAATTGGGAAAGTGTCTCTTCTTTAGAGAGAGAACAACGAGGATATGTGAGGAA 2504 |||| ||||| || || | || ||||| | ||||| || | |||||||| || || Sbjct 5950 TTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2505 GTAGTTTTTTGAAGAAATACGAAATCTTTTAGGAGCTGATGGCATTTTTGTAATACTGGG 2564 ||||| |||||||| ||||| | || | | |||||| ||||||| | Sbjct 5892 AATATTTTTAGAAGAAATGCGAAAAC---GAGAACTCGTTGGCATATTTGTAAGTAAATG 5836 Query 2565 GTTGTCACCAATT 2577 | ||||||||||| Sbjct 5835 GATGTCACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8369360366400