Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007730.2 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 441 1e-120 >seq9745 Length=7305 Score = 441 bits (488), Expect = 1e-120 Identities = 683/969 (70%), Gaps = 16/969 (2%) Strand=Plus/Minus Query 1598 GAAGGTTGCATTTTTGAGTGACCAGTCTCTTAAT-GCTTTGtttttttCTTCGTCTAGGT 1656 |||| ||||||| |||| | |||| |||||| ||| ||| || |||||||| || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGA-CTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1657 ATTCTTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTT 1716 | |||||||| ||| | || ||||||||||| ||||||||||| || ||||| |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1717 TAATTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAA 1776 ||| || || ||| ||||||||| | | || ||||| || |||| ||||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1777 ATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGCGT 1836 |||| ||| | ||||||| || | || ||||| | ||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1837 CATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTA 1896 ||||| |||| ||| ||||||| || ||||| |||| ||| ||||||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1897 GTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTATACTGAGTG 1956 ||| | |||||| ||||| || || || || || ||||||| | |||||| | | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1957 GTCGGAGTGGCCGCAGGCCGGCGTCGGAAATATTTTCCGATGCCCACTCTTCCATTTCCT 2016 ||||| | |||| | ||| || ||||| |||| |||| | || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2017 CTGGTACATTATTAAAAGTAGAAGATAAAAAAGGCGAAATATAAATCTCTAATGGAGGTG 2076 | ||||| || ||||| ||| |||| |||||| |||| ||| || | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2077 TAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAG 2136 || ||| |||| |||||| |||||| ||||||| |||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2137 CTTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2196 ||| ||||| | ||| | | ||| || | ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2197 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATCGATTTGGA 2250 | | || || || ||||| ||| |||| | || ||||||||||| || |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2251 AAACTCCAAAGTCAAGGATGTCTCCGT-CTTCTTCCATGTAGGATTTGACATCGCTTGAG 2309 | |||| | |||| | ||||||| |||| || || || || || || | | ||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTC-TCGATATACGACTTCACGTAG---GAG 6141 Query 2310 CT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGG 2366 || |||| ||||||| ||||| ||||||||||||| ||||||| |||| | || Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2367 TCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGG 2426 ||||||||||||||||| |||| || | || |||||||| ||||| || || || || Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2427 TGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGT 2486 |||| || | ||| || ||||||||||| ||||| | || ||| || Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2487 GTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTAT 2546 || | |||||||| ||| || || | ||| |||||||| || |||||||| || ||| Sbjct 5960 GTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2547 GTGAGGAAA 2555 || || ||| Sbjct 5900 GTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860