Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007965.1 Length=2557 Score E Sequences producing significant alignments: (Bits) Value seq9745 302 7e-79 >seq9745 Length=7305 Score = 302 bits (334), Expect = 7e-79 Identities = 279/351 (79%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 2007 TTTAACGCCTTTGCGTATGTATCGTTAGAAGACTGCTGACCTCCTCTAG------CAGAT 2060 |||| || | |||||| ||| |||| || || ||||| ||||| | ||||| Sbjct 6272 TTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGAT 6213 Query 2061 CTTCCGTCGATCTGGAATTGTCCCCATTCAATTGTATCTCCGTCCTTGTCGATGTAGGAC 2120 ||||| || |||||||||| |||||| |||||||||||||||| ||| ||||| || ||| Sbjct 6212 CTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGAC 6153 Query 2121 TTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTT 2180 || || | ||||||||||||| ||||||| ||||| ||||||||||||| |||||||||| Sbjct 6152 TTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTT 6093 Query 2181 GGGGATACCAAATCGAAGAATCTGTTATTCGTGCAGTTGTATTTTCCTTCGAACTGGATA 2240 || || || | |||||||||||||||||||||||| |||| || |||||||| |||||| Sbjct 6092 GGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATA 6033 Query 2241 AGCACATGAAGATGAGGTTCCCCATTATCGTGAAGCTCTCTACAGATCTTGATGAATTTT 2300 ||||| || ||| ||||||||| || || ||| ||||| || ||||||||| |||| Sbjct 6032 AGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTC 5973 Query 2301 TTGTTTACAGGGGTGTGCAGAGCTTTG-ATTTGGGACAGTGCTTCTTCTTT 2350 |||||||| ||||| | || | |||| || || || ||||| ||||| Sbjct 5972 TTGTTTACTGGGGTATTTAG-GTTTTGAATAATTGAGAGAGCTTCCTCTTT 5923 Score = 114 bits (126), Expect = 2e-22 Identities = 243/358 (68%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 1448 AGATGCGTTTTCATCTTTATCGAGGAAGTCTTTATAGCTAGCCCCCTCTCCTGGATTGCA 1507 || |||||| | ||||| || || || |||||||| || | |||||||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1508 CAGCACGATTGAGGGTATTCCTCCTTTAGTTTGAACTGGCTTCCCGTATTTACAGTTGGA 1567 || | ||||| ||| || || |||||| || || ||||| |||||| | | || | Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1568 CTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGG 1627 |||||| || ||| |||||| || ||||| || |||| ||| |||||| || Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATG------TTTTAAATAACGCGG 6649 Query 1628 GCTTATGTCATCAATGACGTTATATTCGACGTCATTCGAATA-GACTCTGCCATTAAAGT 1686 | || |||||||||||| || | | ||||| || | | || ||| | | Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATA-T 6590 Query 1687 CAAGATGTCCAC-TAAGATAATTATGTTTACCTAATGAACGGGCCCACATTGTTTTTCCA 1745 || ||| || | |||| ||||| ||| |||||||| | ||||| |||||||| ||| Sbjct 6589 CATAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCA 6531 Query 1746 GTTCGACTATCTCCTTCGATGATGATACTTATCGGTCTATCTGCCCGCGCAGCGGCAC 1803 |||| | || ||||| | | ||||| || |||| | | || | ||| ||||| Sbjct 6530 GTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7998445531980