Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008058.1 Length=2614 Score E Sequences producing significant alignments: (Bits) Value seq9745 241 2e-60 >seq9745 Length=7305 Score = 241 bits (266), Expect = 2e-60 Identities = 647/974 (66%), Gaps = 43/974 (4%) Strand=Plus/Minus Query 1555 CCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTAT 1614 || |||||||| || | ||||| || || || ||||||| || || ||| || |||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1615 TTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTT 1674 | | || |||||| || | | |||||| |||| || || | ||||| | Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------T 6660 Query 1675 AGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAACTCTA 1734 | ||| |||| |||| |||||||||||||||| |||| || ||| | | Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1735 GAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACATC 1794 | | | ||| |||||| | || ||||| || |||||||| | |||||| || Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1795 GTCTTTCCCGTTCTTGAATCACCTTCGATGATGATACTGATAGGTCTTAATGTCCGCGCA 1854 || || || ||||| | |||||||| | | ||||| ||||||| | || | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1855 GCGCAACCATTTCCAAAATAATCATCAGCCCATGACTGTAACTCCTCAGGCACGTTGTTA 1914 | | || | ||| | || ||| |||| || | ||| || ||||||||| Sbjct 6479 GAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 1915 AATGAGGAGAGTGAAAATGGAGGAACCCATGGTTC---TGGAGCTTTTGTAAATATCTTC 1971 |||| | | ||| |||| ||| || | | |||||| | |||||| | Sbjct 6422 AATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCATA 6366 Query 1972 TCAAGGTTACCCTTGAGATTGTGAAAATCTTTAACAA-AATCCCTAGGTTGTTCTTCCTT 2030 || | ||| | || | | |||||| | | || || |||| | || ||| |||| | Sbjct 6365 TCCAAATTAGCATTTAATCTATGAAAA-CGTAAATAATAATCTTTTGGGCGTTTTTCCCT 6307 Query 2031 TAAAATTTGGAGTGC--CTCTTGCACTCCATTTGCGTTAAGCGCCTTGGCATACGAGTCG 2088 | || | | || || || | || | || || || | || || || Sbjct 6306 AATTATCTCTAAGGCTGCTGTTTTAGACCCA--GAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2089 TTTGCAGTCTGCTGACCTCCTCTAG------CAGATCTGCCATCGATTTGAAATTCTCCC 2142 || || | || ||||| ||||| | ||||||| ||||| || || ||||||||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2143 CATTCGAGGGTATCTCCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCT 2202 || || | |||||||| | || |||||||| || || || | ||| || |||||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2203 CCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGATCGAACTGTCGT 2262 ||||| ||||| ||||||||||||| ||| |||||||| || || |||||||| || Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2263 TCATTCGTG-ATCTGGACTTTTCCTTCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCC 2321 | ||||||| || || |||| ||||| | ||||| ||| | |||||| |||||| || Sbjct 6068 TTATTCGTGCATGTGTACTTC-CCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCT 6010 Query 2322 ATTCTCGTGAAGCTCTCTGCAAATCTTGATATA----TCGTTTATT--CGAAGTTAGTTG 2375 || || ||| ||||||||||||||||| || | ||||| | | | |||| | Sbjct 6009 GTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG--G 5952 Query 2376 TATTGATTGTAATTGCTCTAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAG 2435 | |||| |||||| | ||||| ||||| ||||||||||| || |||||||| Sbjct 5951 TTTTGA--ATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAG 5896 Query 2436 GAATATATTTTTTGCTTGAAGTCTGAAACGTCTTGGTGGTGGCATATTTGTAATTAAA-G 2494 || |||||||| | || | ||||| | |||||||||||||| |||| | Sbjct 5895 AAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATG 5836 Query 2495 GGTGTACTCCAATT 2508 | ||| | |||||| Sbjct 5835 GATGT-CACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8179147630800