Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008059.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq9745 401 1e-108 >seq9745 Length=7305 Score = 401 bits (444), Expect = 1e-108 Identities = 631/899 (70%), Gaps = 31/899 (3%) Strand=Plus/Minus Query 1544 CCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1603 || ||||||||||| | ||||| || ||||| ||||||| || || |||||||||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1604 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1663 | | ||| ||||||| || | | |||||||| | ||| || | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1664 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTGAGTACACTCTT 1723 ||| |||| | |||| |||||||||||| ||| | || || |||| | || Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1724 GGGTTGAAGTCCAGATGTCCACTAAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACATC 1783 ||| | | || ||| || | | |||||||||||||||||| | | |||||| || Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1784 GTCTTCCCTGTCCTCGAGTCACCTTCTATGATGATACTTACTGGTCTCTCAGGCCGCGCA 1843 || ||||| || || | |||||||||| | ||||| | |||| | ||||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1844 GCGGAACCCCTTCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCCGGAACTTTAGTG 1903 | || || | ||| | ||| || |||| |||| | ||||| || || | Sbjct 6479 GAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 1904 AACGA---GGATAGTTGAAACGGAGGAACCCATCGTTCCGG---AGCCTTTGCGAATATT 1957 || | ||||| ||| |||| ||| || | | || ||||| |||||| Sbjct 6422 AATGTACTGGATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATC 6369 Query 1958 TTCTCTAGGTTGGATCGTATGTTATGGTTTTGCAGCACAAAATCCTTTGGCTGTTCTTCT 2017 | || | || | || |||| | | | |||| ||||| ||| ||| Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCC 6309 Query 2018 TTTAAAACCGCCATGGCAGCTTGAACAGATCCTGCATTCAACGCCTTGGCATATGAATCG 2077 | | | | | | ||| ||| ||| || | ||| | || | || || ||| Sbjct 6308 CTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2078 TTAGCTGACTGCTGACCTCCCCTAGAAG------ATCTGCCGTCGATCTGGAATTCTCCC 2131 ||||| || || ||||| || || | || |||| || || ||||||||||||||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2132 CAGTCAACTGTATCTCCGTCCTTCTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCT 2191 || |||| ||||||||||| ||||||||| || ||||| |||| ||||||||||||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2192 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGGGAGACCAGATCGAACAATCTG 2251 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2252 TTATTCGTGCAGTTGTATTTGCCTTCGAACTGGATGAGAACGTGGAGATGAGGCTCCCCA 2311 ||||||||||| |||| || |||||||| ||||| || ||||||||| |||| |||| Sbjct 6068 TTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTG 6009 Query 2312 TTCTTATGGAATTCCCTGCATACTCTGATGAATTTCTGGTTAACTGGTGTTTTTAGGTTT 2371 || | ||| ||| ||||| | ||||| |||||| ||| ||||| || ||||||||| Sbjct 6008 TTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTT 5949 Query 2372 --AGTAATTGGGAAAGTGCTTCTTCTTTGCTAAGAGAACACTCTGGATATGTGAGGAAA 2428 | ||||| || || ||||| ||||| ||||||| || | |||||||| || ||| Sbjct 5948 TGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8150615720460