Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008236.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq9745 491 8e-136 >seq9745 Length=7305 Score = 491 bits (544), Expect = 8e-136 Identities = 710/996 (71%), Gaps = 18/996 (2%) Strand=Plus/Minus Query 1591 TGGCTCGTTGAGGGTGATGAAGGTTGCATTTTTTATTGCCCAGGCTTTTAATGCACTATT 1650 ||||| | ||||| |||| ||||||| | | ||||||| || | || || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1651 CTTTTCTTCATCAAGATATTCTATATAGGAGGCAGTTGG-TCCTGGATTGCAAAGGAAGA 1709 ||| ||||| |||||| | ||| |||| | |||||| |||||||||||||||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTG-AGTTGGGTCCTGGATTGCAAAGGAAGA 6755 Query 1710 TTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATACTTTGTGTTGCTTTGCCAGT 1769 |||| || || || ||||||| || || ||||| || || || | || ||||| | Sbjct 6754 TTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAAT 6695 Query 1770 CTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAA 1829 | | || ||||||||||||||||||||| || |||| ||| |||| || |||| ||||| Sbjct 6694 CACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAA 6635 Query 1830 TGACGTTGTACCATGCATCATTGCTGTAGACTTTTGGGCTCAAGTCAAGATGACCACACA 1889 ||||||||||||| ||||||||| |||| ||||||||| | ||| |||||| || | Sbjct 6634 TGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1890 AATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTCTTCCCTGTCCTGCTATCACCCT 1949 | || |||||||| || | |||||| ||||| ||||| ||||| || || ||||| | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1950 GTATGACTATACTTACAGGTCTCCATGGCCGCGCAGCGGCATTGGCTATGTTTTCAGAGA 2009 || |||||||| | ||||| |||| | ||| |||| | | | |||||| | Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA 6455 Query 2010 CCCATTCTTCAAGTTCTTCTGGAACTTGATTAAAAGAAGATGAAATAAAAGGAGAAACAT 2069 |||| |||| ||| || || || | ||||| | | || | |||||||||||||| Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2070 AAATATCTATAGGAGGTGTAAAGATCCTATCTAAATTACTATTTAAATTATGAAACTGTA 2129 | || | |||| || ||| |||| |||||| |||||| ||||||| ||| Sbjct 6394 ATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTA 6335 Query 2130 AAACATAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGAAACTTTGGACCCTG 2189 || ||||||||| || ||| ||||| | ||| | | ||| | ||| ||||| | Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2190 AGTTGATTGCCTCGGCATACGCGTCGTTTGCAGATTGGCAACCTCCTC------TAGCTG 2243 | || | || || || || | || || || ||||| ||| |||| | || | Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2244 ATCGTCCATCGATCTGGAAAACTCCAGAATCAAGGATGTCTCCGTCTTTCTCCATGTAGG 2303 ||| |||||| |||||||| |||| |||||| | ||||||| ||||| || || | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2304 TTTTGACATCAGACGAGCT---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACC 2360 || || | | ||||| |||| ||||||| ||||||||||||||||||| ||||| Sbjct 6154 ACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2361 TACTTGGGGATGTGAGATCGAAGAATCTATTATTTTTGCATTGGAATTTTCCTTCGAACT 2420 | |||| || |||||||||||||| ||||| ||||| | | || |||||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2421 GGATGAGAACATGCAGGTGAGGATTCCCATCGTTGTGTAGTTCTCTGCAGATTCTGATGA 2480 |||| || || || || |||| | || | | || ||||||||| || ||||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2481 ATAATATATTAGTTGGGGTTTCTAGGGTTTG--TAATTGTGAAAGTGCTTCTTCTTTTGT 2538 || | || |||||| | |||| |||| |||| ||| || ||||| |||||||| Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT--TGAGAGAGCTTCCTCTTTTGT 5920 Query 2539 AAGTGAGCACTGTGGGTATGTTAGAAAATAATTTTT 2574 ||| ||||| || || |||||||||||| |||||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8667360318840