Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008267.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq9745 379 4e-102 >seq9745 Length=7305 Score = 379 bits (420), Expect = 4e-102 Identities = 673/973 (69%), Gaps = 14/973 (1%) Strand=Plus/Minus Query 1644 CTGCATT-ATGAAGAGACCAATTTTTAAGTGCGATGTTTTTAGGTTCGTCTAAAAACTCT 1702 ||||||| |||| ||| ||| |||| || ||| ||| |||||| | ||||||| Sbjct 6850 CTGCATTTATGA-GAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCT 6792 Query 1703 TTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATT 1762 ||||| || ||||||| | ||| || | ||||| || || ||||||||||||| | Sbjct 6791 TTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACT 6732 Query 1763 TGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCT 1822 | || ||| | || || || |||| ||||| || | | ||||||||| || || Sbjct 6731 TAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCC 6672 Query 1823 TTAAAGTGCTTTAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTT 1882 ||||| || |||| ||| ||||||| |||| |||||||||||| ||||| || ||||| Sbjct 6671 TTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1883 GAGTAAACCCTAGGATTGAGATCTAGATGGCCGCACAAGTAATTGTGCCTACCAAGCGAT 1942 ||| | || | | ||| ||| ||||| ||||||||||| || | ||| Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1943 CTAGCCCACATGGTTTTACCTGTACGACTATCACCTTGTAACACCAGACTCTTTGGTCTT 2002 |||||||| || ||||| || || | | ||||||| || || | |||| | |||| Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 2003 AATGGCCGCGCAGCGGGGTCGACTATGTTCTCGGCGACCCATTCTTCAAGTTCTTCAGGA 2062 |||| | ||| || || | ||| || | ||||| |||| ||| || || Sbjct 6491 TGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGT 6432 Query 2063 ACCTGGTCAAAGGATGAAGATAAGAATGGAGAGGTAAAGACTGGTTGCGGAGTCATGAAG 2122 || | || ||| | |||| || ||||| | | | || | |||| | ||| Sbjct 6431 ACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAAT 6372 Query 2123 ATCTTGTCAAGATTTGTGTTCAAGTTATGAAACTGCAAGATGTAATCTTTAGGCGCAAGT 2182 ||| | || | ||| | || || ||||||| | || |||||||| || || || Sbjct 6371 ATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG-GC--GT 6315 Query 2183 TCTTTAAGAAT-AT-TCAGAGCCTCC-GCTTTGTTTCCTGCATTCATAGCTTTTGCATAA 2239 | || ||| || || || || | | ||| || | ||| | |||| ||| ||| Sbjct 6314 TTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAA 6255 Query 2240 GCGTCGTTAGCGGATTGCTTTCCGCCTCTTGAAG------ATCTTCCATCTATTTGGAAG 2293 | || ||||| ||||| | || ||||||| || |||||||||| || ||||| Sbjct 6254 ACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAAT 6195 Query 2294 GTACCCCATTCAAGGGTATCACCATCCTTTTCGATATATGCTTTGACATCGGAGCTTGAT 2353 ||||| |||| ||||| || | ||| |||||||| | || || | |||||| ||| Sbjct 6194 TCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGAT 6135 Query 2354 TTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCAGATCGAAG 2413 ||| ||||||| ||||| ||||||||||||||||| |||||||| || || ||||||||| Sbjct 6134 TTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAG 6075 Query 2414 AACCTCTTGTTCTTTGTCTTGAACTTACCCTCAAATTGGATAAGCACATGGAGATGTGGT 2473 || || || ||| | || |||| || || |||||||||||||| |||||| | ||| Sbjct 6074 AATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGT 6015 Query 2474 TCCCCATCCTCGTGAAGCTCTGAGCAGATTTTGATATATTTTTTATTTGTTGGGGTATTC 2533 |||| | || ||| ||| ||| || ||||| ||||| || ||| ||||||||| Sbjct 6014 TCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTT 5955 Query 2534 AAATTTCTAATTTGAGAGAGAGCTTCGCTTTTAGAGAGAGAGCAGTGAGGATAGGTGAGG 2593 | ||| ||| ||||||||||| ||| | ||||||||||| ||||| || || Sbjct 5954 AGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2594 AAATAGTTTTTAg 2606 ||| ||||||| Sbjct 5894 AAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8648339045280