Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008283.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 452 7e-124 >seq9745 Length=7305 Score = 452 bits (500), Expect = 7e-124 Identities = 694/980 (71%), Gaps = 21/980 (2%) Strand=Plus/Minus Query 1609 CGAAGGTCGCATTTTTTAGTGCCCAAGATTTCAATGCATTATTTTTGTCCTCGTCAAGGT 1668 ||||| |||||| | || ||||| || || | || || || || |||||||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1669 ATTCTTTATATGACGAGGTAGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1728 | |||||||| ||| | || || |||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1729 TAATTTGAATTGGCTTGCCGTATTTTGTGTTGCTTTGCCAGTTCCTCTGGGCCCCCATAA 1788 ||| || || ||||| |||||| || | || ||||| | || | ||||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1789 ACTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCGT 1848 | || ||||| || |||| ||| | || || |||| ||||||||||||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1849 CATTGTTGTATACCTTGGGGCTCAAGTCTAGATGTCCACAGAGATAATTATGGAGGCCCA 1908 |||||||||| || ||||| | || ||| || || | ||||| || |||| | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1909 ATGATCTAGCCCACATTGTTTTGCCTGTACGACTCTCACCTTCTAACACAATACTAATGG 1968 ||||||||||||| |||||||| || || | | ||||||||||| || ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1969 GCCTCCATGGCCGCGCAGCGGCATCCTTCACATTTTCACTAGCCCATTCTCGTAGTTCCT 2028 | | |||| | ||| |||| | || ||||| | |||| ||| | || || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2029 CTGGAACTTGGTCAAACGACGACGACGGATATGGTGAAACAAATGCATCTACAGGTTTAG 2088 | || || | || ||| | || | | || |||||| || || | ||||| || Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATAT--AT-TGCAGGTGGAG 6380 Query 2089 CA---AATATTTTATCGAAATTAACATTTAAATTGTGGTACTGTAGAACGTAGTCTTTTG 2145 | ||||| |||| |||||| ||||||| | || | ||| | || ||||||| Sbjct 6379 CCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2146 GAGCAAGCTCTT---TAATCAATTGAAGAGCATCGGACTTACTTCCACAATTTAGGGCCT 2202 | || | | || |||| | | | || | | ||| ||| |||||||||| | Sbjct 6319 G-GC--GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTT 6263 Query 2203 GCGCATAAACATCGTTGACGGTGTGTTGACCACCTCGTG------CAGATCTGCCATCTA 2256 || |||||||| || | | |||||||| |||| || ||||||| ||||| | Sbjct 6262 CTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCA 6203 Query 2257 TCTGAAATTCTCCCCATTCGATTGAATCACCGTCTTTGTCCATGTACGCCTTGACATCGG 2316 |||| ||||||||||| || |||| ||| |||| || || || |||| ||| || | || Sbjct 6202 TCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGG 6143 Query 2317 AACTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGCCCTGGTTGAGGATAGCA 2376 | || || ||| ||||||| ||||| ||||||||||||| || |||||||| || | | Sbjct 6142 AGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAA 6083 Query 2377 GGTCGAAGAATCTGTTGTTGGTGCAGACGTATTTTCCTTCGAATTGTATGAGCACATGGA 2436 | |||||||||||||| || ||||| ||| || ||||||||||| || ||||| |||| Sbjct 6082 GATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGA 6023 Query 2437 GATGAGGGCTCCCATCTTCGTGAAGTTCTCTACAGATCTTGACAAACAGCTTGTTGACAG 2496 || |||| || | ||| ||| |||||| || ||||||| | |||||| || | Sbjct 6022 GACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTG 5963 Query 2497 GAGTGTTAAAAGATTTTAATTGTT-CCAGTGCTTCTTCTTTTGTTAGAGAACAGTGTGGA 2555 | || || | | ||| ||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 5962 GGGTATT-TAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2556 TATGTTA-AGAAATAGTTTT 2574 ||||||| | ||||| |||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160