Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008299.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 614 9e-173 >seq9745 Length=7305 Score = 614 bits (680), Expect = 9e-173 Identities = 711/955 (74%), Gaps = 16/955 (2%) Strand=Plus/Minus Query 1651 TTCTTCTCCTCATCCAAAAACTCTTTATAGCTTGAGTTGGGTCCTGGATTGCAGAGGAAG 1710 ||||| || || || | |||||||||||| ||||||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1711 ATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAG 1770 || ||||| || |||||||||| || || ||||||||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1771 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCA 1830 || |||| ||||||||||||||| ||||| || |||| || | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1831 ATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTTGGACTAAGGTCTAGATGACCACAC 1890 ||||||||||||||||| || ||| |||| ||||| || | || |||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1891 AGATAATTGTGTGGACCCAGTGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCC 1950 | ||||||||||| || | ||| || ||||| ||||| ||||| || | | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1951 TCTATGACAATACTTTTAGGTCTCAATGGCCGCGCAGCGGCACCCACGACGTTCTCAGCA 2010 |||| || ||||| |||||| |||| | ||| ||||| ||| ||||| || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2011 GCCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGNNNNNNNNNNNNNNNNNNNNACA 2070 |||| |||| ||| ||||| || | | ||| | ||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2071 TAAACCTCCATG-GGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTG 2129 || | | || | |||| || ||| |||| |||||||||||||| ||||||| | Sbjct 6395 TATAT-TGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2130 -AAGTACATAATCTTTTGGTGCTAATTCTTTAATTA-CTCTAAGAGCTTCTGACTTACTG 2187 || || |||||||||||| | ||| |||||| ||||||| ||| ||| ||| Sbjct 6336 TAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGAC 6279 Query 2188 CCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTG----- 2242 || | || || ||| | |||||| | || || || || ||||| |||||||||| Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2243 -CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGA 2301 ||||||||||||| ||||| || |||||||| || | || ||||||| |||||| | | Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2302 TAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2361 || ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| |||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2362 CTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAAC 2421 |||||||| || || || |||||||||| | ||| ||| |||| || || ||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2422 TGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAATG 2481 ||||| |||||||| ||| ||||||||| ||||||||| |||||||| || || ||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2482 TATTTTTTGTTTACTGGGGTTTGTAGGTTTTGGA--ATTGGGAAAGTGCTTCCTCTTTGG 2539 ||||| |||||||||||||| | ||||||||| | |||| || || |||||||||| | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTG 5921 Query 2540 TGAGAGAGCACTTGGGATAAGTGAGGAAATAATTTTTCGAATTAATAAGGAAACG 2594 | |||||||| | |||||| || || ||| |||||| ||| ||| | ||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500