Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008316.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq9745 545 4e-152 >seq9745 Length=7305 Score = 545 bits (604), Expect = 4e-152 Identities = 701/968 (72%), Gaps = 8/968 (1%) Strand=Plus/Minus Query 1596 CTGCATTCTTTAGAGTCCACGCCTTTAATGCAGCATTCCTATCCTCGTCCAGATATTCTT 1655 ||||||| | |||| ||| | ||| | || || ||| |||| ||||| ||| | |||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1656 TATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTT 1715 |||| || |||||||| || |||||||| |||||||| ||||| || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1716 GAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCTCCCATGAACTCTT 1775 || || || ||||| || | || ||||| || |||| ||| |||||||| || | Sbjct 6730 AAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1776 TAAAATGCTTTAGGTAGTGGGGATCGACGTCATCGATGACGTTGTACCAAGCATCATTAC 1835 ||||||| |||| || | ||||| |||| ||| |||||||||||||| |||||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1836 TGTAGACCTTTGGACTTAGATCCAAGTGTCCACATAAATAGTTGTGTGGGCCTAAACATC 1895 |||| ||||| |||| ||| | || || ||||| || |||||||||||||| ||| Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1896 TGGCCCACATTGTCTTCCCTGTTCTACTCTCTCCCTCTATCACAATACTCTTTGGCCGCC 1955 | ||||| ||||| ||||| |||||| ||| || |||| || |||||| | || || Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1956 ATGGCCGCGCAGCGGCACTAACTACATTCTCAGCAGTCCACTCTTCAAGTTCTTTTGGAA 2015 |||| | ||| |||||| || || || || || ||| |||| ||| | || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2016 CTTGATCGAATGAAGNNNNNNNNNNNGGAGAAATAAATACCTCCAATGGAGGTGCAAAAA 2075 | | | |||| | ||||||| | ||| | ||||| || | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2076 TTCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACT 2135 | |||| ||||| |||||||| ||||||| ||||| | ||||||| || | | Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2136 CCCTAATCACAT-TAAGAGCCTCCGACTTACTTCCAGTGTTAAGTGCCTGGGCGTAAGCG 2194 ||||||| | | |||| || | | ||| |||| || || || | |||||| | Sbjct 6310 CCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2195 TCATTGGCTGATTGTTGCCCCCCTCTTG------CAGATCTTCCATCGATCTGAAACTCT 2248 ||||| || |||||||| |||||||||| ||||||||||||| ||||| || ||| Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2249 CCCCATTCGAGGGTGTCTCCGTCCTTGTTGATGTAGGACTTGACGTCGGAACTTGATTTA 2308 ||||| || | || ||||||| ||| | ||| || ||||| |||| ||| || |||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2309 GCTCCCTGAATGTTTGGATGGAAATGTGTTGACCTGGTTGGGGATACCAAGTCGAAGAAT 2368 ||||||| |||||||||||||||||||||||||||||||| || || | ||||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2369 CGCTGATTCTTGCACTGGTATTTTCCCTCGAACTGGATAAGCACGTGGAGATGAGGGTTC 2428 | | |||| |||| ||| || || ||||| |||||||||||||||||| |||| | | Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2429 CCATTTTGGTGTAGTTCTCGACAGAttttgatgtattttttgtttgttggtgtatctagg 2488 | |||| || ||||| || || ||||||||||| |||||| ||| |||| |||| Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2489 gcttttattttttcaagggtttcttctttgGCGAGAGAGCAGTCTGGATAAGTAAGGAAA 2548 || || || || | ||| ||||| | |||||||||| ||||| || || ||| Sbjct 5951 TTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2549 TAATTTTT 2556 |||||| Sbjct 5891 ATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8664190106580