Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008317.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq9745 389 7e-105 >seq9745 Length=7305 Score = 389 bits (430), Expect = 7e-105 Identities = 670/970 (69%), Gaps = 18/970 (2%) Strand=Plus/Minus Query 1623 GAAGGTTGCATTTTTTATTGCCCAGGCTTTTAATGCACTATTCTTCTCTTCATCAAGATA 1682 |||| ||||||| | | ||||||| || | || ||||| ||||| |||||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1683 TTCTATATAGGATGCCGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTT 1742 ||| |||| || | |||||||||||||| ||||||||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1743 AATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1802 || || || || || || || | | || ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1803 TTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTATACCATGCGTC 1862 ||| ||||| || |||| ||| |||| || |||| |||||||||||| ||||| || || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1863 ATTGCTGTAGACCTTTGGACTCAAGTCAAGATGACCACACAAGTAGTTGTGTGGCCCTAA 1922 |||| |||| ||||| || | ||| |||||| || ||||| |||||||| ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1923 TGACCTTGCCCACATTGTCTTGCCTGTCCTGCTATCACCCTCTATGACTATACTTACAGG 1982 ||| || ||||| ||||| || || || || ||||| |||| |||||||| | ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1983 TCTCCATGGCCGCGCAGCGGCATCTGCTATGTTTTCAGAGACCCATTCCTCTA-ACTCAT 2041 || |||| | ||| |||| | | |||||| ||||| || | | | || | Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC-T 6437 Query 2042 CTGGGACTTGATCAAAAGAAGAAGAAATAAAAGGAGAAACATAAACCTCCATTGGAGGTG 2101 | || || | | ||| | | || | ||||||||||||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2102 TAAAAATCCTATCTAAATTACNNNNNNNNTTATGAAATTGTAAAACAAAATCTTTGGGAG 2161 || ||| |||| |||||| ||||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2162 CTTTCTCCCTTAATATATTGAGGGCCGAAGCTTTGGACCCTGAGTTGATTGCCTCGGCAT 2221 ||| ||||| | ||| | | ||| | | ||| ||||| || || | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2222 ATGCGTCGTTTGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATCGACTTGGA 2275 | | || || || ||||| ||| |||| | || ||||||||||| | |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2276 AAACTCCATTATCAAGGATGTCTCCGTCTTTTTCCATATAGGTTTTGACGTCTGACGAGC 2335 | |||| ||||| | ||||||| || || ||||| | || |||| | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGC 6140 Query 2336 T---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGAGGTAAGGT 2392 | |||| ||||||| ||||| ||||||||||||| ||| ||| |||| ||| ||| | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2393 CGAAGAATCTGTTGTTCTGGCATTTGAACTTTCCTTCGAATTGGATGAGAATATGCAAGT 2452 ||||||||||||| ||| |||| || |||| |||||||||||||| || | || | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2453 GAGGAGTCCCATCTTCGTGTAGTTCCCTGCAGATTCTTACGAATAGTTTATTAGTTGGTG 2512 |||| || | ||| || ||| ||||| || | | | || || || ||| | Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2513 TTGATAGGGCT--AATATTTGTGAAAGTGCTTCCTCTTTGGTGAGTGAGCAATGTGGGTA 2570 | |||| | |||| | ||| || ||||||||||| || || ||||| || || || Sbjct 5959 TATTTAGGTTTTGAATAAT--TGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2571 TGTAAGGAAA 2580 ||| || ||| Sbjct 5901 TGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718083715000