Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008329.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 590 1e-165 >seq9745 Length=7305 Score = 590 bits (654), Expect = 1e-165 Identities = 720/969 (74%), Gaps = 21/969 (2%) Strand=Plus/Minus Query 1646 TTAAT-GCTGAATTTTTATCCTCATTCAAGTA-CTCTTTATATGATGATGTTGGG-CCTG 1702 ||||| |||| || ||||| || | |||| | ||||||||| ||| |||||| |||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGT-CAAGAAACTCTTTATAACTTGA-GTTGGGTCCTG 6770 Query 1703 GATTGCAAAGGAAGATACTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTAG 1762 |||||||||||||||| | || || || ||||||| || || ||||| ||||| | Sbjct 6769 GATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC 6710 Query 1763 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGG 1822 | || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | | Sbjct 6709 TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCG 6650 Query 1823 GGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGAT 1882 | || |||| |||||||||||| ||||| |||||||| |||| ||||||||||| || Sbjct 6649 GATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATAT 6590 Query 1883 CAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTG 1942 || ||| || || || ||||||||||| || | |||||| ||||| |||||||| || | Sbjct 6589 CATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAG 6530 Query 1943 TACGACTATCACCTTCTATCACAATACTTTTGGGTCTCCAAGGCCGCGCAGCGGCAC-CA 2001 | | | |||||||||| || ||||| | |||| ||||| | ||| ||||| || Sbjct 6529 TTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA 6470 Query 2002 CTCACATTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAA 2061 | || || || |||||| |||| ||| || || || | | |||| | || Sbjct 6469 CA-ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGAT 6411 Query 2062 AGAAATGGACAAACAAAAACCTCTAAAGGAGGTGCA---AAAATCCTATCTAAGTTAGAG 2118 | ||| ||| ||||| | | | ||| || || || ||| |||| || |||| Sbjct 6410 ACAAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCA 6354 Query 2119 TTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTAATTA-CTCTAAG 2177 ||||| ||||||| ||||| ||||||||| || | ||| |||||| ||||||| Sbjct 6353 TTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG 6294 Query 2178 AGCCTCAGCCTTACTGCCGCTGTTAATTGCCTGGGCGTAAGCATCATTGGCTGATTGTTG 2237 || | | ||| || || | || | |||||| ||||||| || |||||||| Sbjct 6293 -GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2238 ACCCCCTCTTG------CAGATCGTCCGTCGATCTGAAACTCTCCCCAGTCGAGGGTGTC 2291 ||||||||||| |||||| ||| || ||||| || |||||||| || | || || Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2292 TCCGTCCTTCTCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGG 2351 ||||| |||||| | || ||||| |||| ||||||||||||| ||||||| ||||| || Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGG 6115 Query 2352 ATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTTTGGCATTT 2411 ||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||| | Sbjct 6114 ATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGT 6055 Query 2412 GTATTTGCCTTCGAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGTTC 2471 ||| || ||||||||||||||||||||||||||| |||| || | ||||||| ||| Sbjct 6054 GTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTC 5995 Query 2472 GCTGCAGattttgatgtattttttatttgttggggtgtttaggttttttatttgGGAAAG 2531 ||||| || ||||||||||| || ||| |||||| |||||||||| || || || Sbjct 5994 TCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAG 5935 Query 2532 TGCCTCTTCTTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAAAAGTTTTTGGCATATAT 2591 || || ||||| ||||||||||| || ||||| || || |||| ||||| | | | || Sbjct 5934 AGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAAT 5875 Query 2592 TTGAAAACG 2600 ||||||| Sbjct 5874 GCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680