Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008373.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 480 1e-132 >seq9745 Length=7305 Score = 480 bits (532), Expect = 1e-132 Identities = 666/935 (71%), Gaps = 13/935 (1%) Strand=Plus/Minus Query 1644 TTCTTATCCTCGTCCAAGTACTCTTTATATGATGAAGTTGGTCCTGGATTGCATAGGAAG 1703 |||||||| ||||| | |||||||||| ||| | |||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1704 ATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA-CTTCGTGTTGCTTTGCCA 1762 ||||| || || || ||||||| || || || || ||||| |||| | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCA 6697 Query 1763 GTCTCGTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCTACGTCATC 1822 || | || ||||||||||||||| ||||| || |||| ||| | ||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1823 AATGACGTTGTACCAGGCATCATTAGAATACACCTTGGGACTCAAGTCCAGGTGACCACA 1882 |||||||||||||||||||||||| ||| || || || | || ||||| || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1883 TAAATAGTTATGTGGACCCAAAGAACGAGCCCACATTGTCTTGCCGGTTCTACTCTCGCC 1942 ||| || || ||||| || || || | |||||| ||||| || || |||||| ||| || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1943 CTCGATTACAATACTATTGGGCCTAAAAGGCCGCGCAGCGGCACCCATTACATTTTCTGC 2002 || | || ||||| | || | ||||| | ||| ||||| || || |||||| | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2003 AGCCCATTCTTCGAGTTCTTCCGGAACGAGATCAAAAGAAGAAGAAAGAAAAGGAGATAC 2062 | |||| |||| || ||||| ||| | ||| | | || | ||||||||| || Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2063 AAAAATCTCTNNNNNNNNNNNNNNNNNNCTATCTANNNNNNNNNNNNNNNNATGAAATTG 2122 | | || | |||| | |||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2123 AAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATCGCTAAGGCAGCGTCTTTGGAACC 2182 ||| ||||||||||||| |||| ||||| |||||| ||||||| || ||| || || Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2183 TGCATTTAAAGCCTCTGCACATGCGTCGTTAGC--ATTCTGG-CAGCCTCCCCTAG---C 2236 | ||||| || ||||| | | || ||||| ||| | | | |||| ||| | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2237 ACTTCGTCCGTCGACCTGGAATTGACCCCATTCAATGATGTCTCCATCCTTATGGATGTA 2296 | || ||| || | |||||||| ||||| ||||| | ||||| | ||| | ||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2297 GGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCT 2356 ||||| || | ||||||||||||| ||||||| ||||| ||||||||||||||||| || Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2357 GGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCTTCGAATTG 2416 |||||| || || || ||||||||||||||||||||||| |||| || ||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2417 CATAAGCACGTGGAGATGAGGGTTCCCATTCTTGTGTAATTCTCTGCAAATTTTTATGAA 2476 ||||||||||||||| |||| | || || | || |||||||||||| || ||| | Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2477 TTTTATATTGGTAGGGGTTTGCAGGTTTTG--TAACTGGGAAAGTGCTTCCTCTTTGGTG 2534 ||| | || ||||| | |||||||| ||| || || || |||||||||| || Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTA 5919 Query 2535 AGAGAGCACTGTGGGTATGTTA-AGAAATAATTTT 2568 |||||||| || || ||||||| | ||||| |||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600