Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008374.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 450 2e-123 >seq9745 Length=7305 Score = 450 bits (498), Expect = 2e-123 Identities = 695/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Minus Query 1584 AATGGCTCCGTGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGTTTTTGAGTGCTGCG 1643 ||||||| |||||| |||| ||||||| | | |||||| || | |||||| Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1644 TTCTTTTCTTCGTCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAG 1703 ||||| |||||||| | | |||||||| ||| | ||||||||||||||||||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1704 ATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAG 1763 |||| || || |||||||||| || || |||||||| || || | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1764 TCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGATCTACGTCATCA 1823 || |||| ||||||||||||||| |||||||| |||| ||| | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1824 ATGACGTTATACCAAGCATCATTGCTGTATACTTTTGGACTGAGATCTAGATGGCCACAC 1883 |||||||| ||||| ||||||||| |||| |||||| || | ||| ||| || || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1884 AAATAATTGTGTAGACCCAGAGACCTTGCCCACGTCGTCTTCCCTGTACGACTATCACCC 1943 || ||||||||| | || | || || ||||| | || ||||| || | | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1944 TCTATGACAATACTATTGGGTCTCCATGGCCGCGCAGCTGCATTCATGACATTTTCGGAA 2003 |||| || ||||| | |||| |||| | ||| ||| ||| || ||||| | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2004 ACCCATTCCTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGATAAAAAAGGAGAAATA 2063 ||||| || | ||| || || || | | ||| | | |||| ||||||||||| | Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2064 TAAACCTCTAATGGAGGTGTAAAAATCCTATCCAAATTATTAGTTAAATTATGAAATTGT 2123 || | | ||||| || ||| ||||||||||| | |||| ||||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2124 AAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGCAGCTTTGGACCCT 2183 ||| | ||||||| || ||| ||||| | ||| | | ||| || | ||| ||||| Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCA 6276 Query 2184 GAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCC 2237 ||||| | || || || || | || || || ||||| ||| |||| | || Sbjct 6275 GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCA 6216 Query 2238 GATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCTGTCTTTTTCCATGTAG 2297 ||||||||||| |||||||| |||| ||||| |||| || || || || || Sbjct 6215 GATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATAC 6156 Query 2298 GACTTAACATCTGTTGAGCT---CTTAGCGCTCTGAATGTTCGGATGGAAATGTGTTGAC 2354 ||||| || | ||||| ||| | | ||| ||||| |||||||||||||||||| Sbjct 6155 GACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2355 CTGGTTGGGGATATGAGATCGAAGAATCTGTTGTTTTGGCATTTGAACTTTCCTTCGAAT 2414 |||||||| || | ||||||||||||||||| || |||| || |||| ||||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2415 TGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCCCTGCAGATTCGAATG 2474 ||||| || | || || |||| || | ||| || ||| ||||| || ||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2475 AATAATTTATTGGTTGGGGTTGATAGGGCT--AATAATTGGGAAAGTGCTTCTTCTTTGC 2532 || || || |||||| |||| | ||||||| || || ||||| ||||| Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTG 5921 Query 2533 TAAGCGAGCAGTGTGGGTATGTGAGGAAA 2561 |||| |||||||| || ||||| || ||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600