Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq9745 480 1e-132 >seq9745 Length=7305 Score = 480 bits (532), Expect = 1e-132 Identities = 703/989 (71%), Gaps = 14/989 (1%) Strand=Plus/Minus Query 1644 TGCATTTTTAATTGCCCAGGCTTTCAATGCAGCATTTTTATCTTCTTCGAGATATTCTTT 1703 ||||||| | | ||||||| || | || || || |||||||| || ||| | ||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1704 ATAGGAAGCCGTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTG 1763 ||| | | || || |||||||| ||||||||||| || || || ||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1764 AATTGGTTTCCCGTA-CTTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTT 1822 || || || ||||| |||| | || |||||| || || | ||||||||||||||| | Sbjct 6729 AAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1823 TAAAGTGTTTGAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTG 1882 |||| ||||| | |||| |||| ||||| | ||| |||||||| ||||| || ||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1883 AATAGACCCTTGGGCTAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACC 1942 || ||||||| | ||| |||||| |||| ||||| ||||||||||| || | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1943 TAGCCCACATTGTCTTCCCTGTTCTACTATCACCCTCAACAACTATACTTTGAGGTCTCC 2002 ||||||| ||||| ||||| |||||| ||||| || ||||||||||| ||||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 2003 AGGGCCGCGCAGCGGCACCAACGACGTTCTCAGCTGCCCATTCTTCTAGTTCTTCGGGAA 2062 |||| | ||| ||||| || ||||| || | |||| |||| || || || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2063 CATTATTAAAAGAAGAAGACGAAAAAGGAGAAACATAAACTTCGGGCGGAGCCTGAAAGA 2122 | || ||||| | | || ||||||||||||||| | | | || |||||||| || | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2123 TTCTATCTAAGTTTGACTTTAAATTATGATATTGGAAAATATAATCTTTAGGGAGTTTTT 2182 | |||| || || | ||||| ||||| | | ||| ||||||||| ||| |||||| Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2183 CCCTAATAATTGCCATAGCAGCATCAGCGGAACCTGCATTCAATGCCTCTGCTGCAGCGT 2242 ||||||| || | | || || || || | ||| | || ||||| | | | Sbjct 6310 CCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2243 CGTTAGCAGTCTGGCAGCCTCCCC------TAGCACTTCTTCCGTCGACCTGGAACTCTC 2296 | ||||| | || || || | | ||| |||||| || | |||||| |||| Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2297 CCCATTCCAGGGTGTCGCCGTCCTTGTCGATGTAGGACTTGACGTCCGAGCTAGACTTAG 2356 |||| || | || || |||| ||| ||||| || ||||| |||| ||||| || ||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2357 CTCCCTGAATGTTCGGATGGAAATGTGTTGACCTACTTGGGGAGACCAGGTCGAAGAATC 2416 ||||||| ||||| |||||||||||||||||||| |||| ||||| || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2417 TCTGATTTGTGCAGTTGTATTTGCCCTCGAACTGGATAAGCACATGGAGATGTGGTTCCC 2476 | | ||| ||||| |||| || || ||||| ||||||||||| |||||| | ||||||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2477 CATTCTCATGTAACTCACGGCAGATTTTAATATATTTTTTATTTGTAGGGGTTTGTAAAT 2536 || ||||| || | ||| || || || ||||| || ||| ||||| | || | Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2537 CTTTG---AGTTGCCCTAATGCGTCTTCTTTAGACAGAGAGCATTTTGGGAAAGTGAGAA 2593 |||| | ||| | || || ||||| | |||||||| | || | || |||| Sbjct 5950 -TTTGAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2594 AATAATTTTTGGCCTTAATGCTAAAACGA 2622 || |||||| | ||||| ||||||| Sbjct 5893 AAATATTTTTAGAAGAAATGCGAAAACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8737859765550