Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008492.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq9745 385 8e-104 >seq9745 Length=7305 Score = 385 bits (426), Expect = 8e-104 Identities = 722/1046 (69%), Gaps = 55/1046 (5%) Strand=Plus/Minus Query 1467 GAAGACCGCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAA 1526 |||||| ||||| |||||| |||| | | | ||||| ||| | |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1527 ATCTTTATAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTT 1586 |||||||| || | |||||||||||||| | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1587 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAG 1646 || || || ||||| |||||| | | ||| ||||||| || | | |||||||| | Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1647 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1706 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1707 CACTTCGTTCGAATAGCACC-----GGGCATTGAAATCCAGGTGTCCAC-TAAGATAATT 1760 | || || | | || |||| | | ||| || || | |||| ||||| Sbjct 6621 GGCATCATTG---TTGTACGTTTTTGGGCTT--ATATCATAATGACCGCATAAG-TAATT 6568 Query 1761 ATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCCTCTACTAT 1820 ||||||||||| | | |||||| || || ||||| || || | ||||| ||||| | Sbjct 6567 GTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAAC 6508 Query 1821 GAGACTAACAGGTCTTTCCGGCCGCGCAGCGGAACCTCTCCCAAAATAATCGTCCGCCCA 1880 | ||| | ||||| | |||| | ||| || || || ||| | || || |||| Sbjct 6507 TATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCA 6451 Query 1881 CTCTTGCATCTCGTCCGGCACGTTAGTGAAAGA---GGAGA-----GGGGAAACGGAGGT 1932 ||||| | ||||| ||||| | || | ||| | || ||||| | | Sbjct 6450 GTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT 6391 Query 1933 TCCCAAAGCTTTGGAGGCTTACTGAAAATCCTATCGAGGTTACTGGATAGGTTGTGAAAC 1992 | | || | |||| || ||| ||| |||| | ||| || | ||||| Sbjct 6390 TGC---AGGT--GGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAA 6339 Query 1993 TGAAAGAGATACTTCTCCGGCAGCTTCTCTTTGATGATTTTCATAGCCTCCTCCTTT-GT 2051 | || ||| | | || | || || | || || | | || || || ||| | Sbjct 6338 CGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA-AGGCTGCTGTTTTAGA 6280 Query 2052 TCCAGAGTTCAACGCCTCGGCGGCTGCATCGTTAGATGTCTGCTGACCTCCTCGAGCACT 2111 ||||| || | || || ||| |||| |||| | || ||||| |||| | | | Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2112 T------CTACCGTCGATCTGGAACACCCCCCATTCGATGGTGTCGCCGTCTTTCTCGAC 2165 | || || || |||||||| | ||||| || || || || |||| ||||||| Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2166 GTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTATTGA 2225 || ||||| |||| ||||||||||||| ||||||| ||||| |||||||||||| |||| Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2226 CCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAA 2285 ||||||||| || || |||||||||||||||||||||||||| |||| ||||||||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2286 CTGTATGAGCACGTGGAGATGAGGCTCCCCATTCTCATGAAGTTCTCTGCAGATCTTGAT 2345 || || |||||||||||| |||| |||| || |||||| ||||||||| |||||||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2346 GAACTTCTTGTTCACTGGAGTATTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTA 2403 | | |||||||| ||||| |||||||||||||| |||||| || || |||| ||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTT 5922 Query 2404 GTAAGAGAGCACTGGGGGTATGTGAGGAAATAGTTTTTGGCTTTGAT-TGAGAA--AGAA 2460 ||||||||||| ||||| ||||| || ||| ||||| | || || || |||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAA 5862 Query 2461 CCCTTTCGTGGCATATTTGTAAATAA 2486 | | | |||||||||||||| ||| Sbjct 5861 CTCGT---TGGCATATTTGTAAGTAA 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8153785932720