Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008494.1 Length=2569 Score E Sequences producing significant alignments: (Bits) Value seq9745 161 2e-36 >seq9745 Length=7305 Score = 161 bits (178), Expect = 2e-36 Identities = 273/396 (69%), Gaps = 16/396 (4%) Strand=Plus/Minus Query 1427 GAAGATCGCATTCTTCAGAGTCCAGTTCCTGAGTGATGCGTTTTCAGCTTTGTCGAGGAA 1486 ||||| ||||| | |||| |||| | | | | |||||| | | ||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1487 ATCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTT 1546 |||||||| || | || ||||||||||| | ||||| ||| ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1547 AATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAG 1606 || || || |||||||||||| | | ||| ||||||| | ||| |||||| |||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1607 TTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTC 1666 ||| || | || ||||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1667 CACTTCATTCGAGTAGACCCTGTTATTG-----AAGTCCAAATGTCCACTGAGATAATTA 1721 | ||||| ||| ||| ||| | || |||| || | | ||||| Sbjct 6621 GGCATCATTGTTGTA-----CGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTG 6567 Query 1722 TGTGGGCCTAAAGAACGAGCCCACATTGTTTTGCCTGTCCTTGATTCACCTTCCACTATT 1781 ||||||||||| || | |||||| |||||||| || || || | |||||||| || | | Sbjct 6566 TGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACT 6507 Query 1782 ATACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTC 1817 ||||| ||||||| | |||| | ||| || |||| Sbjct 6506 ATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTC 6471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8036488079100