Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008517.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 549 3e-153 >seq9745 Length=7305 Score = 549 bits (608), Expect = 3e-153 Identities = 710/975 (73%), Gaps = 18/975 (2%) Strand=Plus/Minus Query 1625 GCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTA 1684 |||||| | | |||||| | || | ||||| ||||| |||||||| || ||||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1685 TAACTGGAGTTGGGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGA 1744 ||||| |||||||||||||||||||| |||||||| ||||| || |||||||| | || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1745 ACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTA 1804 | ||||| ||||| || |||| | ||||| || |||| ||||||||| ||||| ||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1805 AAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATTATTG 1864 || || |||| || | |||||||||| |||||||||||| ||||| ||||||| ||| Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1865 TAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGTCCAAGTGACCTC 1924 || |||||||| | || |||||| || || ||||||||||| || | ||| || Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1925 GCCCACATCGTCTTCCCCGTCCTACTCTCACCCTCAATCACTATACTTACGGGCCTTAAT 1984 ||||| || || ||||| || ||| |||||| || | |||||||| | || | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1985 GGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCAGTCTTCGAGTTCCTCTGGAACT 2044 |||| | ||| |||||| |||||||| || || ||||||||| || ||| || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2045 CGATCAAATG-AAGAAATAGAAAAAGGAGAAATATAAACCTCCACTGGAGGTGTAAAAAT 2103 | ||||| | ||| ||||||||||| ||| | | ||||| || || Sbjct 6428 TTGTTAAATGTACTGGATA-CAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2104 CCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTC 2163 | |||| ||||| | |||||| ||||||| ||||| | ||||||| || ||| || Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2164 CCTTAAAATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTC 2223 ||| | || | | ||| | | ||| ||||| ||||| | || || || || | || Sbjct 6309 CCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATC 6250 Query 2224 GTTGGCAGATTGCTGACCTCCTC------TAGCAGATCTGCCATCGATTTGGAAAACTCC 2277 || || ||||| ||||| |||| | |||||||| ||||| || ||||| |||| Sbjct 6249 ATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCC 6190 Query 2278 AAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACGTCTGACGAGCT---CTT 2334 ||||||| ||||||| || || | ||| | ||| |||| | ||||| || Sbjct 6189 CCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGATTT 6133 Query 2335 AGCTCTCTGAATGTTTGGATGGAAATGTGCTGATCTTGTTGGGGAAACCAGGTCGAAGAA 2394 | ||| ||| ||||||||||||||||||| ||| || ||||| || || || |||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2395 TCTGTTATTTGTGCATTGGAATTTTCCTTCAAATTGGATGAGCACGTGGATATGAGGTTC 2454 ||||||||| |||||| | | || ||||| |||||||| |||||||||| | ||||||| Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2455 CCCATTTTCATGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGTTTCTAG 2514 || ||||||||| ||||| || | | ||| || || ||| || | ||| Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2515 TTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTGAAAGAGAACATTTAGGGTATGTAAGA 2572 ||||| ||||| || || || || ||||||| |||||| || | || ||||| ||| Sbjct 5952 GTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2573 AAATAATTTTTAGAA 2587 ||| |||||||||| Sbjct 5894 AAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720