Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008559.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq9745 623 2e-175 >seq9745 Length=7305 Score = 623 bits (690), Expect = 2e-175 Identities = 726/975 (74%), Gaps = 10/975 (1%) Strand=Plus/Minus Query 1583 CGAAGATCGCATTCTTGAGAGTCCAGTTCTTTAATGCTGTGtttttttCCTCGTTGAGGA 1642 |||||| ||||| |||||| |||| ||| | |||| ||| || || |||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1643 ATTCTTTATAACTGCTGTTTGGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTT 1702 | ||||||||||| ||| || || |||||||| ||||||||||| || |||||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1703 TAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1762 ||| || || ||||||||||| || | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1763 ATTCCTTGAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCTT 1822 ||||||| || || || | | ||||||| |||| ||||||||||||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1823 CATTGCTGTAGACCTTTGGGCTTAGATCCAGATGTCCACACAGATAATTGTGTGGGCCTA 1882 ||||| |||| |||||||||| ||| ||| || || | |||||||||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1883 GTGACCTAGCCCACATCGTCTTCCCGGTACGACTGTCTCCCTCAATCACTATACTCATTG 1942 ||| |||||||| || || ||||| || | | || || || | ||||||||||| | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1943 GTCTTAGGGGCCGCGCAGCGGCGTCGACGACGTTCTCCGACACCCACTCTTCAAGTTCTT 2002 ||| | |||| | ||| ||| || ||||| || ||||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2003 CTGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGAGAAACATAAACCTCCAACGGAGGTG 2062 | || || | | || | | || | ||||||||||||||| | | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2063 TGAAGATCCTTTCTAAATTAGCATTTAGATTATGAAATTGTAAAACATAATCTTTGGGTG 2122 ||| ||| | || ||||||||||||| ||||||| ||||| ||||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2123 CTAACTCTTTAATCACAT-TAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCG 2181 | || |||| | | |||| || ||| ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2182 TAAGCATCATTGGCTGATTGTTGTCCCCCTCTTG------CAGATCGTCCGTCGATCTGA 2235 ||| ||||||| || |||||||| |||||||||| |||||| ||| || ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2236 AACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTGGATGTAGGACTTGACGTCGGAGCTG 2295 || |||||||| || | || ||||||| ||| | ||| || ||||| |||| ||||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2296 GATTTAACTCCCTGGATGTTTGGATGGAAAAGTGCTGACCTGGTTGGGGATACCAGGTCG 2355 |||||| ||||||| ||||||||||||||| ||| |||||||||||| || || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2356 AAGAATCTGTTATTCTTGCACTGGTATTTCCCCTCGAACTGAATAAGCACGTGGAGATGA 2415 ||||||||||||||| |||| ||| ||||| ||||| || ||||||||||||||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2416 GGGTTCCCATTTTGGTGGAGCT-CTCTGCAGATTTTGATGTATTTTTTATTTGTTGGGGT 2474 || | || |||| || |||| ||||||| || ||||||||||| || ||| |||||| Sbjct 6017 GGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2475 TTCTAGGTTTTGAAGTTGTGAAAGTGCTTCTTCTTTAGTTAAAGAGCACTCAGGATATGT 2534 | ||||||||||| ||| || ||||| ||||| || | |||||| | |||||||| Sbjct 5958 ATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGT 5899 Query 2535 AAGAAAATAATTTTT 2549 |||||| |||||| Sbjct 5898 TAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8540551828440