Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008779.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq9745 345 7e-92 >seq9745 Length=7305 Score = 345 bits (382), Expect = 7e-92 Identities = 654/954 (69%), Gaps = 30/954 (3%) Strand=Plus/Minus Query 1504 GCAGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAA 1563 || ||||| | |||| ||| || || |||||||| |||| |||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1564 AGCACGATTGCTGGGATACCTCCTTTTATTTGAACTGGCTTGCCGTACTTGCAATTTGAC 1623 || | ||||| || || || ||||| | || || ||||| ||||| | | ||| || Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1624 TGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGT 1683 ||||| || | | |||||||| ||||| || | || |||| ||| |||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGA 6648 Query 1684 GCGACGTCATCAATGACGTTATACTCCACGTCATTTGAGTA--TACCCGGTGATTGAAGT 1741 | |||| |||||||||||| ||| | ||||| ||| | || | || | | Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG-GCTTATA-T 6590 Query 1742 CCAGATGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTG 1801 | ||| || | | |||||| ||||||||||| | | |||||| || || ||||| | Sbjct 6589 CATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAG 6530 Query 1802 TCCTTGAATCACCTTCAACTATGAGACTTACTGGTCTCTCAGGCCGCGCAGCGGCACCTC 1861 | || | |||||||| || | | ||| | |||| | ||||| | ||| ||||| Sbjct 6529 TTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC--- 6473 Query 1862 TCCCAAAATAATCATCTGCCCACTCTTGCATCTCTTCTGGAACGGATGTGAATGA---GG 1918 || ||| | || || |||| ||||| | || || ||| | |||| || Sbjct 6472 TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGG 6413 Query 1919 AGAGGGGAAACGGCGGGACCCACGGTTCCGGATTCTTCTGAAATATTTTGGTTGCATTAG 1978 | | ||| || | || | | | || ||| ||||| | ||||| Sbjct 6412 ATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 1979 CAACCAGGTTGTGATGTTGAAGGAAGAAATGTTGCGGTTGTTCTTCCTTTATGATTTGCA 2038 || | | ||| | | | ||| || || ||| |||| | || || | | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2039 GAGCTGCCTCTGCGGAACCGGCGTTCAACGCCTTGGCATATGAATCGTTAGCTGTCTGCT 2098 ||||| | || || | || | || | || || ||| ||||| | || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2099 GACCTCCTCGAG------CAGATCTGCCGTCGATCTGGAATTCTCCCCATTCGATGGTGT 2152 |||| |||| | ||||||| || || ||||||||||||||||| || || || | Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2153 CTCCGTCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCG 2212 |||||| ||||||| || ||||| |||| ||||||||||||| ||||||||||||| | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2213 GATGGAAATGTATTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCACT 2272 ||||||||||| ||||||||||||| || || |||||||||||||||||||||||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATG 6056 Query 2273 GGTACTTCCCTTCGAACTGGAGGAGAATGTGGAGGTGAGGCTCCCCATTTTCGTGTAATT 2332 ||||||||||||||| |||| || | |||||| |||| |||| ||||| || || Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTT 5996 Query 2333 CTCTGCAGATCTTGATGAACTTCTTGTTCACCGGAGTGTTTAGGTTTTG--TAATTGGGA 2390 ||||||| ||||||||| | |||||||| || || || ||||||||||| |||||| || Sbjct 5995 CTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGA 5936 Query 2391 AAGTGCTTCTTCTTTAGTAAGAGAGCACTTAGGATATGTGAG-GAAATAGTTTT 2443 || |||| ||||| ||||||||||| | |||||||| || ||||| |||| Sbjct 5935 GAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169636994020