Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008793.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq9745 381 1e-102 >seq9745 Length=7305 Score = 381 bits (422), Expect = 1e-102 Identities = 674/982 (69%), Gaps = 23/982 (2%) Strand=Plus/Minus Query 1609 GAAGGTTGCATTTTTAATTGCCCAGGCCTTTAGTGCAGCATTCTTGTCCTCATTTAAATA 1668 |||| ||||||| | | ||||||| ||| | || || ||||| || || | | | | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1669 CTCAGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTT 1727 ||| | || ||| |||||| ||||||||||| ||||||||||| || || || |||| Sbjct 6795 CTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1728 TAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1787 ||| || || || || ||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1788 ATTCCTTAAAGTGCTTTAGGTAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCT 1847 |||||||||| || |||| || | ||||| |||| ||||||||||||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1848 CGTTGCTGTAAACCTTGGGGCTTAAGTCAAGGTGGCCGCAAAGGTAGTTGTGATGTGGGT 1907 | ||| |||| || ||||||| ||| || ||||| | ||| ||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG---TGGGC 6560 Query 1908 CCAATGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCTCCCTCAATCACAATACTCA 1967 | ||||| || ||||| || || ||||| || || || || || | || ||||||| Sbjct 6559 CTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCA 6500 Query 1968 TGGGCCTCCATGGCCGCGCAGCGGAATCCTTGATGTTCTCTGAAACCCAGCACTCAAGTT 2027 | || | |||| | ||| || | | | ||| ||| ||||||| | ||| Sbjct 6499 TAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAA 6440 Query 2028 CTTCTGGAACTTGATCAAAAGAGGAAGATAAAAAAGGAGAAACAAATGGCTCCAAAGTAG 2087 || || || | | ||| | |||| ||||||||||||| || | || | Sbjct 6439 TCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC---AGGTG 6383 Query 2088 GAGCA---AAAATCCTATCTANNNNNNNNNNNNNNNTATGAAATTGTAAAACAAAATCTT 2144 |||| || ||| |||| | ||||||| ||||| | |||||| Sbjct 6382 GAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTT 6323 Query 2145 TGGGAGCTTTCTCCCTTAATATACAGAGTGCCGATGACTTAGATCCTGAGTTGATTGCCT 2204 | || ||| ||||| | ||| | || | || ||||| || || || | || | Sbjct 6322 TTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTT 6263 Query 2205 CGGCATACGCGTCGTTGGCAGATTGGCAACCTCCTCTAG------CTGATCTTCCATCGA 2258 | || || | || || || ||||| ||| ||||| | | ||||||||||| | Sbjct 6262 CTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCA 6203 Query 2259 CTTGGAAAATTCCAAAGTCAAGGATGTCTCCGTCTTTCTCCATGTAGGTCTTGACATCTG 2318 ||||| ||| | |||| | ||||||| ||||| || || | ||| || | Sbjct 6202 TCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT--- 6146 Query 2319 ACGAGCTC---TTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTAGTTGGGGATA 2375 | ||||| ||| ||||||| ||||||||||||||||||| |||||| ||||| || | Sbjct 6145 AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGA 6086 Query 2376 CGAGATCGAAGAATCTTTGATTTGTGCATTGATATTTCCCTTCGAATTGGATGAGGATGT 2435 | |||||||||||||| | ||| |||||| || ||||||||||||||||| || | || Sbjct 6085 CAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGT 6026 Query 2436 GGAGATGAGGGCTCCCATCTTCGTGTAATTCTCTGCAGATTCGGATGAACAATTTATTTG 2495 ||||| |||| || | ||| || ||||||||| || |||| | || ||| Sbjct 6025 GGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTA 5966 Query 2496 TTGGTGTTTCTAGGGCTTGAATTTGGGAAAGTGCTTCTTCTTTGGTAAGAGAGCAGTGTG 2555 ||| || | |||| |||||| || || ||||| ||||| |||||||||||||| | Sbjct 5965 CTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGG 5906 Query 2556 GGTATGTAAGGAAATAATTTTT 2577 | ||||| || ||| |||||| Sbjct 5905 GATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8648339045280