Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008794.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 461 1e-126 >seq9745 Length=7305 Score = 461 bits (510), Expect = 1e-126 Identities = 661/936 (71%), Gaps = 13/936 (1%) Strand=Plus/Minus Query 1641 GTTCTTTTCTTCATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAA 1700 |||||| ||||| || || || |||||||| || || |||||||||||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1701 GATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCA 1760 ||| ||||| || |||||||||| || || |||||||||||| | | || ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1761 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTAGTGCGGATCTACGTCATC 1820 || |||| ||||||||||||||| ||||| ||||||| || ||||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1821 AATGACGTTGAACCAGGCATCATTGCTGTACACTTTAGGGCTCAGATCTAGATGTCCACA 1880 |||||||||| |||||||||||||| ||||| ||| ||||| | ||| ||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1881 CAAATAATTGTGTGGTCCTAATGACCTGGCCCACATGGTCTTCCCCGTCCTGCTATCACC 1940 || ||||||||||| |||||||| || ||||| || || ||||| || || ||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1941 CTCTATGACTATACTTACCGGTCTCAATGGCCGCGCAGCGGAACTGACGACATTGTCGGC 2000 |||| |||||||| | |||| |||| | ||| || ||| || || || || | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2001 AGCCCATTCATCAAGTTCTTCTGGAACTTGGTCAAAAGNnnnnnnnnNNAATGGAGAAAT 2060 | |||| || | ||| || || || | || ||| | || ||||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2061 ATATTCCTCTAATGGAGGAGTAAAAATCCTATCTAAATTANNNNNNNNNNTATGAAATTG 2120 |||| | ||||| || ||| |||| |||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2121 TAAAACAAAATCTTTAGGGGCCTTTTCCCTCAATATATTGAGGGCCGATGTTTTGGACCC 2180 |||| | ||||||| ||| |||||||| | ||| | | ||| | |||||| ||||| Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2181 CGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGC 2234 ||||| | || || || || | || || || ||||| ||| |||| | || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2235 CGATCGTCCATCGATCTGGAAAATTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTA 2294 |||| |||||| |||||||| ||| ||||| ||||||| || || || || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2295 TGATTTAACATCTGTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2351 || || || | ||||| |||| ||||||| ||||| ||||||||||||| ||| Sbjct 6156 CGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2352 CCTGTTTGGGGATATGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTCCCTTCGAA 2411 |||| |||| || | |||||||||||||| | ||| | || | | ||||||||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2412 CTGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAGATTCTGAT 2471 ||||| || | || || |||| || | ||| || ||||||||| || |||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2472 GAATAATTTAGTAATTGGGGTTTCTAGGGCTTTAATTTGGGAAAGTGCTTCCTCTTTGGT 2531 | || || | | |||||| | |||| || ||| || || ||||||||||| || Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGT 5920 Query 2532 AAGAGAACAGTGTGGGTATGTGAG-GAAATAGTTTT 2566 |||||| ||||| || ||||| || ||||| |||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860