Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009030.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq9745 551 9e-154 >seq9745 Length=7305 Score = 551 bits (610), Expect = 9e-154 Identities = 712/978 (73%), Gaps = 10/978 (1%) Strand=Plus/Minus Query 1611 GAAGACCGCATTTTTAATTGCCCAGGCCTTTAATGGTGCGTTCTTTTCCTCATCCAAGTA 1670 |||||| |||||| | | ||||||| ||| | | ||||||||| || || || | | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1671 CTCTTTATATGATGAAGTGGGTCCTGGATTGCAGAGGAAGATTGCCGGGATACCTCCTTT 1730 ||||||||| ||| |||||||||||||||| |||||||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1731 AATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCATGAA 1790 || || || || || ||||| || | || ||||| || |||| || |||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1791 TTCTTTAAAGTGCTTTAGATAATGAGGATCGACGTCATCAATGACGTTGTACCAAGCATT 1850 ||| ||||| || |||| |||| | ||||| |||| |||||||||||||||||| |||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1851 ATTACTGTACACCTTTGGACTGAGGTCAAGATGACCACACAAATAATTGTGTGGTCCTAA 1910 ||| ||||| ||||| || | ||| |||||| || || ||||||||||| ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1911 TGACCTAGCCCACATTGTCTTGCCGGTACGACTATCCCCTTCAATCACAATACTCATGGG 1970 ||| |||||||| ||||| || || || | | || ||||| | || |||||||| || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1971 TCTCAATGGCCGCGCAGCGGCAGTGACAACATTCTGTGCCGCCCACTCTTCAAGTTCCTC 2030 || |||| | ||| |||| | ||||| || | | | |||| |||| ||| ||| Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2031 TGGAACTTGATCGAACGAAGAACATAAGAAAGGTGAAACATATTCCTCCAACGGAGGTGT 2090 || || | | || | | ||| ||||| ||||||||| | |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2091 AAAAATCCTATCTAAATTACTTTTCAAATTATGATACTGAAAAATAAAATCTTTAGGGAG 2150 || ||| |||| |||||| || || ||||| | | ||| | ||||||| ||| | Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2151 TTTCTCCCTAATAATAGCCAGAGCGGCTTCAGCGGACCCTGCGTTTAATGCCTCGGCGCA 2210 ||| |||||||| || | | || ||| ||||| | |||| || || ||| | Sbjct 6315 TTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTA 6256 Query 2211 TGCGTCGTTAGC--ATT-ATGGCAGCCTCCTCTA---GCACTTCTGCCGTCGATCTGGAA 2264 | || ||||| ||| || | |||| | || ||| ||| || || |||||||| Sbjct 6255 AACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAA 6196 Query 2265 TTCCCCCCATTCGAGTGCGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGA 2324 ||| ||||| || | || ||||| | ||| ||||| || ||||| |||| |||||| || Sbjct 6195 TTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGA 6136 Query 2325 TTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAA 2384 |||| ||||||| ||||| |||||||||||||||||||||||||| || || || ||||| Sbjct 6135 TTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAA 6076 Query 2385 GAATCTGTTATTTTTGCAGTTGAATTTTCCTTCGAACTGAATAAGCACGTGGAGATGAGG 2444 |||||||||||| |||| || | || |||||||| || ||||||||||||||| |||| Sbjct 6075 GAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGG 6016 Query 2445 CTCCCCATCTTCGTGTAGTTCTCTGCAAATTTTGATGAATTTTTTATTTGTTGGAGTA-- 2502 |||| | ||| || |||||||||||| |||||| |||| || ||| ||| ||| Sbjct 6015 TTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATT 5956 Query 2503 TCAGTATTTAATAATTGAGATAGTGCTTCTTCTTTATTTAGAGAGCATTTGGGATAAGTG 2562 | || || |||||||||| || ||||| ||||| | |||||||| | |||||| || Sbjct 5955 TAGGTTTTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2563 AGGAAATAATTTTTGGAA 2580 || ||| |||||| ||| Sbjct 5897 AGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8648339045280