Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009031.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 361 9e-97 >seq9745 Length=7305 Score = 361 bits (400), Expect = 9e-97 Identities = 535/760 (70%), Gaps = 10/760 (1%) Strand=Plus/Minus Query 1622 GCATTCTTGAAGGCCCAGTCTTTTAGTGGTGTATTCTTTTCCTCGTCTAGATACTCTTTA 1681 ||||| ||| |||||| || | | || ||||| || ||||| ||| |||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1682 TACGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1741 || || | |||||||||||||| |||||||| ||||| || |||||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1742 ATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTA 1801 | |||||| ||||| | | || ||||| || || | |||||||||||| |||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1802 AAGTGCTTCAGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAG 1861 || || || | || |||||||||||| |||||||||||| ||||| ||||||||| | Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1862 TACACTTTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTG 1921 ||| |||||| || | || ||| ||||||| ||||||||| || |||||||| || Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1922 GCCCACATTGTCTTGCCTGTACGACTATCACCCTCTATCACAATACTAATCGGTCTCCAA 1981 ||||| ||||| || || || | | ||||| |||| || ||||| || |||| | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1982 GGCCGCGCAGCGGCACCCATCACGTTTTCAGCCGCCCAGACTTCAAGTTCTTCCGGAACT 2041 |||| | ||| ||||| || |||||||| | ||||| ||| ||| ||||| || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2042 TGATTGAAAGAAGAACAAAGAAAAGGAGAAATATAAGGAGCCGGAGGCTCCTGAAAAATC 2101 | || || | | | | ||||||||||| ||| || || || |||| || ||| Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 2102 CTATCTAAATTANNNNNNNNNNTATGATA--CTGAAAAATAAATTTTTCAGGGAGTTTCT 2159 |||| |||||| ||||| | | || ||||| |||| ||| |||| | Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTT 6311 Query 2160 CCCTTATGATTTGCAAAGCAGCGTCTTTACTACCTGCATTTAAGGCATCCGCTGCCGCAT 2219 |||| || || | || || || |||| || | ||||| ||| || || ||| Sbjct 6310 CCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2220 CATTAGCTGTCTGCTGACCTCCTC------TAGCAGATCTTCCGTCGACCTGAAAAGTAC 2273 ||||||| | || ||||| |||| | ||||||||||| || | ||| || | Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2274 CCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCTGATGAGGATTTAG 2333 |||| || || ||| |||| ||||||||| || ||||| || | || ||||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2334 CTCCCTGGAAATTTGGATGGAATTGGGAGGAGCTGGTGGG 2373 ||||||| | ||||||||||| || | || ||||| || Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGG 6091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080