Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009088.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq9745 448 8e-123 >seq9745 Length=7305 Score = 448 bits (496), Expect = 8e-123 Identities = 693/988 (70%), Gaps = 15/988 (2%) Strand=Plus/Minus Query 1575 CGAAGATCGCATTCTTCACTGCCCAGTTTTTGAGTGCGGTGTTCTTTTCCTCCTCTAGAA 1634 |||||| ||||| | | |||||| || | || | |||||| || || || |||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1635 ATTCTTTATAACTGCTGATGGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTT 1694 | ||||||||||| | |||| || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1695 TAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1754 ||| || || ||||| ||||| | |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1755 ACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGT 1814 | || ||||| || || | | ||||||| |||| |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1815 CGTTACTGTACACCTTTGGACTAAGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTA 1874 | || ||||| ||||| || | ||| | || || || | || || |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1875 AAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACTTTGAG 1934 | || |||||||| ||||| |||||||| | | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1935 GTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTTTCCGACGCCCACTCTTCAAGTTCTT 1994 ||| | |||| | ||| ||| ||||| ||||| |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 1995 CTGGAACTTGATTGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCT 2054 | || || | || || | | || ||||||||||||||| || ||||| ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2055 GAAATATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAG 2114 | |||||| | || | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2115 CTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGTGCTGCGGCG 2173 | |||| |||| | ||||||| || ||| ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2174 TAAGCGTCGTTGGCTGTCTGCTGCCCTCCTC------TTGCTGACCTTCCGTCGATCTGA 2227 ||| | || || || | || || || |||| |||| || ||||| || ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2228 AATTGGCCCCATTCGAGAATGTCCCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTG 2287 |||| ||||| || | | || |||| ||| ||||| || ||||| |||| ||||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2288 GATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGAGACCAAGTCG 2347 |||||| ||||||||||||| ||||||||||||| ||| ||| |||| ||||| | ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2348 AAGAATCGCATATTCTGGCACTTGAATTTCCCCTCGAACTGGATGAGAACATGCAAGTGA 2407 ||||||| ||||| ||| || | ||||| ||||| ||||| || || || | || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2408 GGAGTCCCATCTTCATGAAGCTCTCTGCAGATTTTAATATNNNNNNNNNNTGAAGTTGGG 2467 || || | ||||||| |||||||| || || || | | |||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT---ACTGGG 5961 Query 2468 GTTTGGAGATTT--AATAATTGGGAAAGTGTTTCCTCTTTGGTGAGAGAACATTTGGGAT 2525 || | || ||| ||||||| || || | ||||||||| || ||||| || | ||||| Sbjct 5960 GTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2526 AAGTGATGAAATAGTTTTTGGAATAAAT 2553 | || | ||| ||||| ||| |||| Sbjct 5902 ATGTTAGAAAAATATTTTTAGAAGAAAT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8540551828440