Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009354.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq9745 482 4e-133 >seq9745 Length=7305 Score = 482 bits (534), Expect = 4e-133 Identities = 688/968 (71%), Gaps = 12/968 (1%) Strand=Plus/Minus Query 1610 GCATTTAA-AGTGCCCAGGCCTTGAAAGCGGAATTCTTTTCCTCGTCCAGGAATTCTTTA 1668 ||||||| || ||||||| ||| | ||| | ||||| || ||||| || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1669 TAGCTGGAATTGGGCCCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGA 1728 || || || ||||| ||||||||||||||||||||||| || ||||||||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1729 ACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTA 1788 | ||||| ||||| | |||| ||||| || || | ||||||||| || || ||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1789 AAGTGTTTGAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTG 1848 || ||||| | |||| | |||||||||| |||||||||||||||||| || || || || Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1849 TATACCTTTGGGCTGAGGTCCAGATGCCCACAGAGATAATTATGTGGACCCAATGACCTG 1908 || |||||||| | || ||| || || | ||||| ||||| || ||||| || Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1909 GCCCACATCGTCTTCCCCGTTCGACTGTCACCTTCAACCACAAAACTGAAGGGCCTCCGA 1968 ||||| || || ||||| |||| | |||||||| || || | ||| | || | || Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1969 GGCCGCGCAGCGGCCGCCACGACATTCTCACACGCCCACTCTTCAAGTTCGTCGGGAACT 2028 |||| | ||| ||| ||| || || || |||| |||| ||| || || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2029 TGATCGAAAGANNNNNNNNNNNNNNNNNAAATATAAACCTCCAAAGGAGGTGTGAAAATC 2088 | | || | ||| ||| | | |||| ||| ||| Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 2089 CTATGTAGATTAGCATATAAATTATGAAATTGTAAAACATAATCCTTAGGGGGTAGTTCT 2148 ||| | |||||||| ||| ||||||| ||||| |||||| || ||| || ||| Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCC 6309 Query 2149 CTAAGTA-CTGTAAGAGCCTCTGGCTAACTGCCTGTGTGAAGCGCTGCGGCGGGTAAGCG 2207 |||| || || |||| || ||| | | || | | || ||| | ||| ||| | Sbjct 6308 CTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG--TAAACA 6252 Query 2208 TCGTTTGCTGTCTGCTGTCCTCCTCTTG------CAGATCTTCCGTCGATCTGAATCTCT 2261 || || || | || || || ||||||| |||||||||| || ||||| | ||| Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2262 CCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTA 2321 ||||| || | || ||||||| ||| ||||| || ||||| |||| ||||| |||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2322 GCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGAGACCAAGTCGAAGAAT 2381 ||||||| ||||| ||||||||||||| ||| ||| |||| ||||| | ||||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2382 CGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCC 2441 | | |||| ||| |||| ||||| ||||| |||||||||||||| ||| |||||||| Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2442 CCATTCTCGTGAAGCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGG 2501 | || || ||| ||| |||| | ||||||||||| || ||| |||||| | |||| Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2502 TTTTGGATTTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCATTTGGGATAAGTGAG-GAA 2560 ||||| || || || || || ||||| || |||||||| | |||||| || || || Sbjct 5951 TTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2561 ATAGTTTT 2568 ||| |||| Sbjct 5891 ATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8619807134940