Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009451.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq9745 414 2e-112 >seq9745 Length=7305 Score = 414 bits (458), Expect = 2e-112 Identities = 538/744 (72%), Gaps = 6/744 (1%) Strand=Plus/Minus Query 1596 TGCATTCTTGATGGCCCACTGCTTGAGTGCAGAATTCTTTTCTTCGTCCAAGAATTCTTT 1655 |||||| ||| ||||| ||| | || | ||||| |||||||| | || ||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1656 ATAGCTGGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATTCCGCCTTTAATTTG 1715 ||| || || ||||| ||||||||||| ||||||||||| || || |||||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1716 AACTGGCTTTCCGTATTTCGTGTTTGATTGCCAATCCCTCTGGGCCCCCATGAATTCTTT 1775 || |||||||||||| | | || | |||||||| || | ||||||||||||||| || Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1776 AAAGTGTTTCAAATAATGCGGATCTACGTCATCAATGACGTTATACCAAGCATCGTTTGA 1835 ||| ||||| |||||| ||||||| |||| |||||||||||| ||||| ||||| || Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1836 ATAAATTTTAGGGCTTAAATCCAAATGCCCACATAAATAATTATGTGGGCCTAATGATCT 1895 || |||| ||||||| ||| |||| || ||||| ||||| ||||||||||||||||| Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 1896 GGCCCATAAAGTCTTCCCTGTCCGACTATCGCCCTCGACGACAATACTATTAGGTCTATA 1955 ||||||| || ||||| || | | || || || || || ||||| |||||| | Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 1956 TGGCCGCGCAGCGGCACTCTTCACATTCTCAGACACCCACTCTTCTAACTCCTCAGGGAC 2015 |||| | ||| ||||||| || || || ||||| |||| | ||| || || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2016 TCTATCAAACGAAGAAGACAAAAAAGGACTAACATAAACCTCTAATGGAGGTGCAAAAAT 2075 | | ||| | | || | ||||||| |||||| | | ||||| || || Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2076 CCTATCTAAATTTGATTTTAAATTATGATACTGGAAAATAAAATCTCTTGGGAGTTTCTC 2135 | |||| ||||| | ||||| ||||| | | ||| | ||||| ||||| |||| || Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2136 CCTAATAACATTTAAAGCAGCTTCAGCAGACCCAGAATTTAATGCCTCAGCTGCAGCATC 2195 |||||| | | ||| || ||| |||||||||||||| || || || | |||| Sbjct 6309 CCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATC 6250 Query 2196 GTTAGCTGTCTGTTGACCTCCTC------TAGCAGATCTTCCATCGATCTGAAATCGACC 2249 ||||| | |||||||| |||| | |||||||||||||| ||||| ||| || Sbjct 6249 ATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCC 6190 Query 2250 CCATTCGACGTAATCTCCGTCCTTCTCGATGTATCTCTTGACATCAGAGCTGGATCTAGC 2309 ||| || | |||||||| ||||||||| || ||| || | ||||||||| || | Sbjct 6189 CCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACC 6130 Query 2310 TCCCTGGATGTGCGCATGGAATTG 2333 |||||| |||| | |||||| || Sbjct 6129 TCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641998620760