Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009490.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq9745 129 1e-26 >seq9745 Length=7305 Score = 129 bits (142), Expect = 1e-26 Identities = 213/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 1549 TCCTGGATTGCACAGCACGATTGATGGGATACCACCTTTAATTTGAACCGGCTTTCCATA 1608 |||||||||||| || | ||||| || || || ||||||| || || |||||||| || Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1609 TTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTT 1668 | | | || |||||||||| ||| |||||| || ||||| || | | | || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTT 6661 Query 1669 TAGGTAGTGCGGTGCGACATCATCAATGACGTTATACTCCACATGATTGGAGTAAACCCT 1728 || || |||| | || | |||||||||||| ||| ||| |||| ||| | Sbjct 6660 TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1729 AGAATTGAAATCTAAATGACCGCTCAAGTAGTTATGTGGGCCTAAAGCACGAGCCCACAT 1788 | | | ||| ||||||||| ||||| || ||||||||||| | | |||||| || Sbjct 6600 TGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1789 TGTCTTGCCCGTTCGTGATTCCCCTTCGACGATAATACTAATAGGTCTCTCTGGCCGCGC 1848 ||| || || |||| | || ||||| || | ||||| ||||||| | |||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1849 AGCGGAAC 1856 || || || Sbjct 6480 AGAGGCAC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8163296569500